Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CUTA (cutA divalent cation tolerance homolog)

Identity

Alias_namesC6orf82
ACHAP
chromosome 6 open reading frame 82
acetylcholinesterase-associated protein
cutA divalent cation tolerance homolog (E. coli)
Other alias
HGNC (Hugo) CUTA
LocusID (NCBI) 51596
Atlas_Id 52985
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33416542 and ends at 33418288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CUTA (6p21.32) / RPS23 (5q14.2)DDX21 (10q22.1) / CUTA (6p21.32)SLC22A1 (6q25.3) / CUTA (6p21.32)
SLC22A1 CUTA

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CUTA   21101
Cards
Entrez_Gene (NCBI)CUTA  51596  cutA divalent cation tolerance homolog
AliasesACHAP; C6orf82
GeneCards (Weizmann)CUTA
Ensembl hg19 (Hinxton)ENSG00000112514 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112514 [Gene_View]  ENSG00000112514 [Sequence]  chr6:33416542-33418288 [Contig_View]  CUTA [Vega]
ICGC DataPortalENSG00000112514
TCGA cBioPortalCUTA
AceView (NCBI)CUTA
Genatlas (Paris)CUTA
WikiGenes51596
SOURCE (Princeton)CUTA
Genetics Home Reference (NIH)CUTA
Genomic and cartography
GoldenPath hg38 (UCSC)CUTA  -     chr6:33416542-33418288 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CUTA  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblCUTA - 6p21.32 [CytoView hg19]  CUTA - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBICUTA [Mapview hg19]  CUTA [Mapview hg38]
OMIM616953   
Gene and transcription
Genbank (Entrez)AF106943 AF230924 AK311556 AL533788 BC005890
RefSeq transcript (Entrez)NM_001014433 NM_001014837 NM_001014838 NM_001014840 NM_015921
RefSeq genomic (Entrez)NC_000006 NG_016137 NT_167249
Consensus coding sequences : CCDS (NCBI)CUTA
Cluster EST : UnigeneHs.520070 [ NCBI ]
CGAP (NCI)Hs.520070
Alternative Splicing GalleryENSG00000112514
Gene ExpressionCUTA [ NCBI-GEO ]   CUTA [ EBI - ARRAY_EXPRESS ]   CUTA [ SEEK ]   CUTA [ MEM ]
Gene Expression Viewer (FireBrowse)CUTA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51596
GTEX Portal (Tissue expression)CUTA
Human Protein AtlasENSG00000112514-CUTA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60888   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60888  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60888
Splice isoforms : SwissVarO60888
PhosPhoSitePlusO60888
Domains : Interpro (EBI)Ion_tolerance_CutA    N-reg_PII-like_a/b    N-reg_PII/ATP_PRibTrfase_C   
Domain families : Pfam (Sanger)CutA1 (PF03091)   
Domain families : Pfam (NCBI)pfam03091   
Conserved Domain (NCBI)CUTA
DMDM Disease mutations51596
Blocks (Seattle)CUTA
PDB (SRS)1XK8    2ZFH   
PDB (PDBSum)1XK8    2ZFH   
PDB (IMB)1XK8    2ZFH   
PDB (RSDB)1XK8    2ZFH   
Structural Biology KnowledgeBase1XK8    2ZFH   
SCOP (Structural Classification of Proteins)1XK8    2ZFH   
CATH (Classification of proteins structures)1XK8    2ZFH   
SuperfamilyO60888
Human Protein Atlas [tissue]ENSG00000112514-CUTA [tissue]
Peptide AtlasO60888
HPRD12902
IPIIPI00554634   IPI00034319   IPI00554556   IPI00945251   IPI00945699   IPI00946837   IPI00945375   
Protein Interaction databases
DIP (DOE-UCLA)O60888
IntAct (EBI)O60888
FunCoupENSG00000112514
BioGRIDCUTA
STRING (EMBL)CUTA
ZODIACCUTA
Ontologies - Pathways
QuickGOO60888
Ontology : AmiGOcopper ion binding  protein binding  protein localization  response to metal ion  membrane  enzyme binding  extracellular exosome  
Ontology : EGO-EBIcopper ion binding  protein binding  protein localization  response to metal ion  membrane  enzyme binding  extracellular exosome  
NDEx NetworkCUTA
Atlas of Cancer Signalling NetworkCUTA
Wikipedia pathwaysCUTA
Orthology - Evolution
OrthoDB51596
GeneTree (enSembl)ENSG00000112514
Phylogenetic Trees/Animal Genes : TreeFamCUTA
HOVERGENO60888
HOGENOMO60888
Homologs : HomoloGeneCUTA
Homology/Alignments : Family Browser (UCSC)CUTA
Gene fusions - Rearrangements
Fusion : QuiverCUTA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCUTA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CUTA
dbVarCUTA
ClinVarCUTA
1000_GenomesCUTA 
Exome Variant ServerCUTA
ExAC (Exome Aggregation Consortium)ENSG00000112514
GNOMAD BrowserENSG00000112514
Varsome BrowserCUTA
Genetic variants : HAPMAP51596
Genomic Variants (DGV)CUTA [DGVbeta]
DECIPHERCUTA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCUTA 
Mutations
ICGC Data PortalCUTA 
TCGA Data PortalCUTA 
Broad Tumor PortalCUTA
OASIS PortalCUTA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCUTA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCUTA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CUTA
DgiDB (Drug Gene Interaction Database)CUTA
DoCM (Curated mutations)CUTA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CUTA (select a term)
intoGenCUTA
Cancer3DCUTA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616953   
Orphanet
DisGeNETCUTA
MedgenCUTA
Genetic Testing Registry CUTA
NextProtO60888 [Medical]
TSGene51596
GENETestsCUTA
Target ValidationCUTA
Huge Navigator CUTA [HugePedia]
snp3D : Map Gene to Disease51596
BioCentury BCIQCUTA
ClinGenCUTA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51596
Chemical/Pharm GKB GenePA134928220
Clinical trialCUTA
Miscellaneous
canSAR (ICR)CUTA (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCUTA
EVEXCUTA
GoPubMedCUTA
iHOPCUTA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:00:59 CET 2018

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