Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CUTC (cutC copper transporter)

Identity

Alias_namescutC copper transporter homolog (E. coli)
Alias_symbol (synonym)CGI-32
Other alias
HGNC (Hugo) CUTC
LocusID (NCBI) 51076
Atlas_Id 62204
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 99732201 and ends at 99756137 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CUTC (10q24.2) / C19orf57 (19p13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CUTC   24271
Cards
Entrez_Gene (NCBI)CUTC  51076  cutC copper transporter
AliasesCGI-32
GeneCards (Weizmann)CUTC
Ensembl hg19 (Hinxton)ENSG00000119929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119929 [Gene_View]  chr10:99732201-99756137 [Contig_View]  CUTC [Vega]
ICGC DataPortalENSG00000119929
TCGA cBioPortalCUTC
AceView (NCBI)CUTC
Genatlas (Paris)CUTC
WikiGenes51076
SOURCE (Princeton)CUTC
Genetics Home Reference (NIH)CUTC
Genomic and cartography
GoldenPath hg38 (UCSC)CUTC  -     chr10:99732201-99756137 +  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CUTC  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblCUTC - 10q24.2 [CytoView hg19]  CUTC - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBICUTC [Mapview hg19]  CUTC [Mapview hg38]
OMIM610101   
Gene and transcription
Genbank (Entrez)AF132966 AK001142 AK302507 AK314687 BC011016
RefSeq transcript (Entrez)NM_015960
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CUTC
Cluster EST : UnigeneHs.16606 [ NCBI ]
CGAP (NCI)Hs.16606
Alternative Splicing GalleryENSG00000119929
Gene ExpressionCUTC [ NCBI-GEO ]   CUTC [ EBI - ARRAY_EXPRESS ]   CUTC [ SEEK ]   CUTC [ MEM ]
Gene Expression Viewer (FireBrowse)CUTC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51076
GTEX Portal (Tissue expression)CUTC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTM9
Splice isoforms : SwissVarQ9NTM9
PhosPhoSitePlusQ9NTM9
Domains : Interpro (EBI)Cu_homeostasis_CutC    Cu_homeostasis_CutC_dom   
Domain families : Pfam (Sanger)CutC (PF03932)   
Domain families : Pfam (NCBI)pfam03932   
Conserved Domain (NCBI)CUTC
DMDM Disease mutations51076
Blocks (Seattle)CUTC
PDB (SRS)3IWP   
PDB (PDBSum)3IWP   
PDB (IMB)3IWP   
PDB (RSDB)3IWP   
Structural Biology KnowledgeBase3IWP   
SCOP (Structural Classification of Proteins)3IWP   
CATH (Classification of proteins structures)3IWP   
SuperfamilyQ9NTM9
Human Protein AtlasENSG00000119929
Peptide AtlasQ9NTM9
HPRD13100
IPIIPI00300408   IPI00983017   IPI00644387   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTM9
IntAct (EBI)Q9NTM9
FunCoupENSG00000119929
BioGRIDCUTC
STRING (EMBL)CUTC
ZODIACCUTC
Ontologies - Pathways
QuickGOQ9NTM9
Ontology : AmiGOcopper ion binding  copper ion binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  copper ion transport  protein tetramerization  copper ion homeostasis  
Ontology : EGO-EBIcopper ion binding  copper ion binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  copper ion transport  protein tetramerization  copper ion homeostasis  
NDEx NetworkCUTC
Atlas of Cancer Signalling NetworkCUTC
Wikipedia pathwaysCUTC
Orthology - Evolution
OrthoDB51076
GeneTree (enSembl)ENSG00000119929
Phylogenetic Trees/Animal Genes : TreeFamCUTC
HOVERGENQ9NTM9
HOGENOMQ9NTM9
Homologs : HomoloGeneCUTC
Homology/Alignments : Family Browser (UCSC)CUTC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCUTC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CUTC
dbVarCUTC
ClinVarCUTC
1000_GenomesCUTC 
Exome Variant ServerCUTC
ExAC (Exome Aggregation Consortium)CUTC (select the gene name)
Genetic variants : HAPMAP51076
Genomic Variants (DGV)CUTC [DGVbeta]
DECIPHERCUTC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCUTC 
Mutations
ICGC Data PortalCUTC 
TCGA Data PortalCUTC 
Broad Tumor PortalCUTC
OASIS PortalCUTC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCUTC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCUTC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CUTC
DgiDB (Drug Gene Interaction Database)CUTC
DoCM (Curated mutations)CUTC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CUTC (select a term)
intoGenCUTC
Cancer3DCUTC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610101   
Orphanet
MedgenCUTC
Genetic Testing Registry CUTC
NextProtQ9NTM9 [Medical]
TSGene51076
GENETestsCUTC
Target ValidationCUTC
Huge Navigator CUTC [HugePedia]
snp3D : Map Gene to Disease51076
BioCentury BCIQCUTC
ClinGenCUTC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51076
Chemical/Pharm GKB GenePA134901980
Clinical trialCUTC
Miscellaneous
canSAR (ICR)CUTC (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCUTC
EVEXCUTC
GoPubMedCUTC
iHOPCUTC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:56 CEST 2017

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