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CWC15 (CWC15 spliceosome associated protein homolog)

Identity

Alias_namesCWC15 homolog (S. cerevisiae)
CWC15 spliceosome-associated protein homolog (S. cerevisiae)
CWC15 spliceosome-associated protein
Alias_symbol (synonym)C11orf5
HSPC148
Cwf15
AD002
Other aliasORF5
HGNC (Hugo) CWC15
LocusID (NCBI) 51503
Atlas_Id 62206
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 94962622 and ends at 94973612 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CWC15   26939
Cards
Entrez_Gene (NCBI)CWC15  51503  CWC15 spliceosome associated protein homolog
AliasesAD002; C11orf5; Cwf15; HSPC148; 
ORF5
GeneCards (Weizmann)CWC15
Ensembl hg19 (Hinxton)ENSG00000150316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150316 [Gene_View]  chr11:94962622-94973612 [Contig_View]  CWC15 [Vega]
ICGC DataPortalENSG00000150316
TCGA cBioPortalCWC15
AceView (NCBI)CWC15
Genatlas (Paris)CWC15
WikiGenes51503
SOURCE (Princeton)CWC15
Genetics Home Reference (NIH)CWC15
Genomic and cartography
GoldenPath hg38 (UCSC)CWC15  -     chr11:94962622-94973612 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CWC15  -     11q21   [Description]    (hg19-Feb_2009)
EnsemblCWC15 - 11q21 [CytoView hg19]  CWC15 - 11q21 [CytoView hg38]
Mapping of homologs : NCBICWC15 [Mapview hg19]  CWC15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF110775 AF161497 AJ250393 AK225956 AK309042
RefSeq transcript (Entrez)NM_016403
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CWC15
Cluster EST : UnigeneHs.503597 [ NCBI ]
CGAP (NCI)Hs.503597
Alternative Splicing GalleryENSG00000150316
Gene ExpressionCWC15 [ NCBI-GEO ]   CWC15 [ EBI - ARRAY_EXPRESS ]   CWC15 [ SEEK ]   CWC15 [ MEM ]
Gene Expression Viewer (FireBrowse)CWC15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51503
GTEX Portal (Tissue expression)CWC15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P013   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P013  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P013
Splice isoforms : SwissVarQ9P013
PhosPhoSitePlusQ9P013
Domains : Interpro (EBI)Cwf_Cwc_15   
Domain families : Pfam (Sanger)Cwf_Cwc_15 (PF04889)   
Domain families : Pfam (NCBI)pfam04889   
Conserved Domain (NCBI)CWC15
DMDM Disease mutations51503
Blocks (Seattle)CWC15
SuperfamilyQ9P013
Human Protein AtlasENSG00000150316
Peptide AtlasQ9P013
HPRD13703
IPIIPI00009009   
Protein Interaction databases
DIP (DOE-UCLA)Q9P013
IntAct (EBI)Q9P013
FunCoupENSG00000150316
BioGRIDCWC15
STRING (EMBL)CWC15
ZODIACCWC15
Ontologies - Pathways
QuickGOQ9P013
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  spliceosomal complex  mitochondrion  nuclear speck  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  spliceosomal complex  mitochondrion  nuclear speck  catalytic step 2 spliceosome  
Pathways : KEGGSpliceosome   
NDEx NetworkCWC15
Atlas of Cancer Signalling NetworkCWC15
Wikipedia pathwaysCWC15
Orthology - Evolution
OrthoDB51503
GeneTree (enSembl)ENSG00000150316
Phylogenetic Trees/Animal Genes : TreeFamCWC15
HOVERGENQ9P013
HOGENOMQ9P013
Homologs : HomoloGeneCWC15
Homology/Alignments : Family Browser (UCSC)CWC15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCWC15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CWC15
dbVarCWC15
ClinVarCWC15
1000_GenomesCWC15 
Exome Variant ServerCWC15
ExAC (Exome Aggregation Consortium)CWC15 (select the gene name)
Genetic variants : HAPMAP51503
Genomic Variants (DGV)CWC15 [DGVbeta]
DECIPHERCWC15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCWC15 
Mutations
ICGC Data PortalCWC15 
TCGA Data PortalCWC15 
Broad Tumor PortalCWC15
OASIS PortalCWC15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCWC15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CWC15
DgiDB (Drug Gene Interaction Database)CWC15
DoCM (Curated mutations)CWC15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CWC15 (select a term)
intoGenCWC15
Cancer3DCWC15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCWC15
Genetic Testing Registry CWC15
NextProtQ9P013 [Medical]
TSGene51503
GENETestsCWC15
Target ValidationCWC15
Huge Navigator CWC15 [HugePedia]
snp3D : Map Gene to Disease51503
BioCentury BCIQCWC15
ClinGenCWC15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51503
Chemical/Pharm GKB GenePA162383026
Clinical trialCWC15
Miscellaneous
canSAR (ICR)CWC15 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCWC15
EVEXCWC15
GoPubMedCWC15
iHOPCWC15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:38 CEST 2017

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