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CWC25 (CWC25 spliceosome-associated protein homolog)

Identity

Alias_namesCCDC49
coiled-coil domain containing 49
CWC25 spliceosome-associated protein homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ20291
Other alias
HGNC (Hugo) CWC25
LocusID (NCBI) 54883
Atlas_Id 54243
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36956687 and ends at 36981603 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CWC25 (17q12) / B4GALNT2 (17q21.32)CWC25 (17q12) / FBXO47 (17q12)CWC25 (17q12) / MED24 (17q21.1)
CWC25 (17q12) / ROBO2 (3p12.3)USP32 (17q23.1) / CWC25 (17q12)CWC25 17q12 / B4GALNT2 17q21.32
CWC25 17q12 / FBXO47 17q12CWC25 17q12 / MED24 17q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CWC25   25989
Cards
Entrez_Gene (NCBI)CWC25  54883  CWC25 spliceosome-associated protein homolog
AliasesCCDC49
GeneCards (Weizmann)CWC25
Ensembl hg19 (Hinxton)ENSG00000273559 [Gene_View]  chr17:36956687-36981603 [Contig_View]  CWC25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000273559 [Gene_View]  chr17:36956687-36981603 [Contig_View]  CWC25 [Vega]
ICGC DataPortalENSG00000273559
TCGA cBioPortalCWC25
AceView (NCBI)CWC25
Genatlas (Paris)CWC25
WikiGenes54883
SOURCE (Princeton)CWC25
Genetics Home Reference (NIH)CWC25
Genomic and cartography
GoldenPath hg19 (UCSC)CWC25  -     chr17:36956687-36981603 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CWC25  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblCWC25 - 17q12 [CytoView hg19]  CWC25 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICWC25 [Mapview hg19]  CWC25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000298 AK225373 AK296115 AK302983 AK316077
RefSeq transcript (Entrez)NM_017748
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)CWC25
Cluster EST : UnigeneHs.406223 [ NCBI ]
CGAP (NCI)Hs.406223
Alternative Splicing GalleryENSG00000273559
Gene ExpressionCWC25 [ NCBI-GEO ]   CWC25 [ EBI - ARRAY_EXPRESS ]   CWC25 [ SEEK ]   CWC25 [ MEM ]
Gene Expression Viewer (FireBrowse)CWC25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54883
GTEX Portal (Tissue expression)CWC25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXE8
Splice isoforms : SwissVarQ9NXE8
PhosPhoSitePlusQ9NXE8
Domains : Interpro (EBI)CIR_N_dom    CWC25   
Domain families : Pfam (Sanger)Cir_N (PF10197)    CWC25 (PF12542)   
Domain families : Pfam (NCBI)pfam10197    pfam12542   
Domain families : Smart (EMBL)Cir_N (SM01083)  
Conserved Domain (NCBI)CWC25
DMDM Disease mutations54883
Blocks (Seattle)CWC25
SuperfamilyQ9NXE8
Human Protein AtlasENSG00000273559
Peptide AtlasQ9NXE8
HPRD07892
IPIIPI00015618   IPI00792575   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXE8
IntAct (EBI)Q9NXE8
FunCoupENSG00000273559
BioGRIDCWC25
STRING (EMBL)CWC25
ZODIACCWC25
Ontologies - Pathways
QuickGOQ9NXE8
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkCWC25
Atlas of Cancer Signalling NetworkCWC25
Wikipedia pathwaysCWC25
Orthology - Evolution
OrthoDB54883
GeneTree (enSembl)ENSG00000273559
Phylogenetic Trees/Animal Genes : TreeFamCWC25
HOVERGENQ9NXE8
HOGENOMQ9NXE8
Homologs : HomoloGeneCWC25
Homology/Alignments : Family Browser (UCSC)CWC25
Gene fusions - Rearrangements
Fusion : MitelmanCWC25/B4GALNT2 [17q12/17q21.32]  
Fusion : MitelmanCWC25/MED24 [17q12/17q21.1]  [t(17;17)(q12;q21)]  
Fusion : MitelmanCWC25/ROBO2 [17q12/3p12.3]  [t(3;17)(p12;q12)]  
Fusion : MitelmanUSP32/CWC25 [17q23.1/17q12]  [t(17;17)(q12;q23)]  
Fusion: TCGACWC25 17q12 B4GALNT2 17q21.32 LUAD
Fusion: TCGACWC25 17q12 FBXO47 17q12 BRCA
Fusion: TCGACWC25 17q12 MED24 17q21.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCWC25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CWC25
dbVarCWC25
ClinVarCWC25
1000_GenomesCWC25 
Exome Variant ServerCWC25
ExAC (Exome Aggregation Consortium)CWC25 (select the gene name)
Genetic variants : HAPMAP54883
Genomic Variants (DGV)CWC25 [DGVbeta]
DECIPHER (Syndromes)17:36956687-36981603  ENSG00000273559
CONAN: Copy Number AnalysisCWC25 
Mutations
ICGC Data PortalCWC25 
TCGA Data PortalCWC25 
Broad Tumor PortalCWC25
OASIS PortalCWC25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCWC25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCWC25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CWC25
DgiDB (Drug Gene Interaction Database)CWC25
DoCM (Curated mutations)CWC25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CWC25 (select a term)
intoGenCWC25
Cancer3DCWC25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCWC25
Genetic Testing Registry CWC25
NextProtQ9NXE8 [Medical]
TSGene54883
GENETestsCWC25
Huge Navigator CWC25 [HugePedia]
snp3D : Map Gene to Disease54883
BioCentury BCIQCWC25
ClinGenCWC25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54883
Chemical/Pharm GKB GenePA165431769
Clinical trialCWC25
Miscellaneous
canSAR (ICR)CWC25 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCWC25
EVEXCWC25
GoPubMedCWC25
iHOPCWC25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:58:04 CEST 2017

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