Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CWF19L1 (CWF19 like cell cycle control factor 1)

Identity

Alias (NCBI)C19L1
SCAR17
hDrn1
HGNC (Hugo) CWF19L1
HGNC Alias symbFLJ10998
hDrn1
LocusID (NCBI) 55280
Atlas_Id 62208
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 100232296 and ends at 100267681 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CWF19L1 (10q24.31) / TAPBP (6p21.32)HPSE2 (10q24.2) / CWF19L1 (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  HPSE2/CWF19L1 (10q24)

External links

Nomenclature
HGNC (Hugo)CWF19L1   25613
Cards
Entrez_Gene (NCBI)CWF19L1    CWF19 like cell cycle control factor 1
AliasesC19L1; SCAR17; hDrn1
GeneCards (Weizmann)CWF19L1
Ensembl hg19 (Hinxton)ENSG00000095485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095485 [Gene_View]  ENSG00000095485 [Sequence]  chr10:100232296-100267681 [Contig_View]  CWF19L1 [Vega]
ICGC DataPortalENSG00000095485
TCGA cBioPortalCWF19L1
AceView (NCBI)CWF19L1
Genatlas (Paris)CWF19L1
SOURCE (Princeton)CWF19L1
Genetics Home Reference (NIH)CWF19L1
Genomic and cartography
GoldenPath hg38 (UCSC)CWF19L1  -     chr10:100232296-100267681 -  10q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CWF19L1  -     10q24.31   [Description]    (hg19-Feb_2009)
GoldenPathCWF19L1 - 10q24.31 [CytoView hg19]  CWF19L1 - 10q24.31 [CytoView hg38]
ImmunoBaseENSG00000095485
genome Data Viewer NCBICWF19L1 [Mapview hg19]  
OMIM616120   616127   
Gene and transcription
Genbank (Entrez)AK000876 AK001860 AK023984 AK055313 AK097895
RefSeq transcript (Entrez)NM_001303404 NM_001303405 NM_001303406 NM_001303407 NM_018294
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CWF19L1
Alternative Splicing GalleryENSG00000095485
Gene ExpressionCWF19L1 [ NCBI-GEO ]   CWF19L1 [ EBI - ARRAY_EXPRESS ]   CWF19L1 [ SEEK ]   CWF19L1 [ MEM ]
Gene Expression Viewer (FireBrowse)CWF19L1 [ Firebrowse - Broad ]
GenevisibleExpression of CWF19L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55280
GTEX Portal (Tissue expression)CWF19L1
Human Protein AtlasENSG00000095485-CWF19L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YN2
Splice isoforms : SwissVarQ69YN2
PhosPhoSitePlusQ69YN2
Domains : Interpro (EBI)Cwf19-like    Cwf19-like_C_dom-1    Cwf19-like_C_dom-2    HIT-like_sf   
Domain families : Pfam (Sanger)CwfJ_C_1 (PF04677)    CwfJ_C_2 (PF04676)   
Domain families : Pfam (NCBI)pfam04677    pfam04676   
Conserved Domain (NCBI)CWF19L1
Blocks (Seattle)CWF19L1
SuperfamilyQ69YN2
Human Protein Atlas [tissue]ENSG00000095485-CWF19L1 [tissue]
Peptide AtlasQ69YN2
HPRD13101
IPIIPI00101600   IPI00386343   IPI00478313   IPI01015536   
Protein Interaction databases
DIP (DOE-UCLA)Q69YN2
IntAct (EBI)Q69YN2
BioGRIDCWF19L1
STRING (EMBL)CWF19L1
ZODIACCWF19L1
Ontologies - Pathways
QuickGOQ69YN2
Ontology : AmiGOmRNA splicing, via spliceosome  molecular_function  cellular_component  biological_process  positive regulation of catalytic activity  RNA lariat debranching enzyme activator activity  post-mRNA release spliceosomal complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  molecular_function  cellular_component  biological_process  positive regulation of catalytic activity  RNA lariat debranching enzyme activator activity  post-mRNA release spliceosomal complex  
NDEx NetworkCWF19L1
Atlas of Cancer Signalling NetworkCWF19L1
Wikipedia pathwaysCWF19L1
Orthology - Evolution
OrthoDB55280
GeneTree (enSembl)ENSG00000095485
Phylogenetic Trees/Animal Genes : TreeFamCWF19L1
HOGENOMQ69YN2
Homologs : HomoloGeneCWF19L1
Homology/Alignments : Family Browser (UCSC)CWF19L1
Gene fusions - Rearrangements
Fusion : QuiverCWF19L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCWF19L1 [hg38]
dbVarCWF19L1
ClinVarCWF19L1
MonarchCWF19L1
1000_GenomesCWF19L1 
Exome Variant ServerCWF19L1
GNOMAD BrowserENSG00000095485
Varsome BrowserCWF19L1
Genomic Variants (DGV)CWF19L1 [DGVbeta]
DECIPHERCWF19L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCWF19L1 
Mutations
ICGC Data PortalCWF19L1 
TCGA Data PortalCWF19L1 
Broad Tumor PortalCWF19L1
OASIS PortalCWF19L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCWF19L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCWF19L1
Mutations and Diseases : HGMDCWF19L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CWF19L1
DgiDB (Drug Gene Interaction Database)CWF19L1
DoCM (Curated mutations)CWF19L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CWF19L1 (select a term)
intoGenCWF19L1
Cancer3DCWF19L1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616120    616127   
Orphanet23648   
DisGeNETCWF19L1
MedgenCWF19L1
Genetic Testing Registry CWF19L1
NextProtQ69YN2 [Medical]
GENETestsCWF19L1
Target ValidationCWF19L1
Huge Navigator CWF19L1 [HugePedia]
ClinGenCWF19L1
Clinical trials, drugs, therapy
MyCancerGenomeCWF19L1
Protein Interactions : CTD
Pharm GKB GenePA134864340
Clinical trialCWF19L1
Miscellaneous
canSAR (ICR)CWF19L1 (select the gene name)
HarmonizomeCWF19L1
DataMed IndexCWF19L1
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCWF19L1
EVEXCWF19L1
GoPubMedCWF19L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:51:03 CET 2020
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