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CWF19L1 (CWF19 like 1, cell cycle control (S. pombe))

Identity

Alias_symbol (synonym)FLJ10998
hDrn1
Other aliasC19L1
SCAR17
HGNC (Hugo) CWF19L1
LocusID (NCBI) 55280
Atlas_Id 62208
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 100232296 and ends at 100267681 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CWF19L1 (10q24.31) / TAPBP (6p21.32)HPSE2 (10q24.2) / CWF19L1 (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CWF19L1   25613
Cards
Entrez_Gene (NCBI)CWF19L1  55280  CWF19 like 1, cell cycle control (S. pombe)
AliasesC19L1; SCAR17; hDrn1
GeneCards (Weizmann)CWF19L1
Ensembl hg19 (Hinxton)ENSG00000095485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095485 [Gene_View]  chr10:100232296-100267681 [Contig_View]  CWF19L1 [Vega]
ICGC DataPortalENSG00000095485
TCGA cBioPortalCWF19L1
AceView (NCBI)CWF19L1
Genatlas (Paris)CWF19L1
WikiGenes55280
SOURCE (Princeton)CWF19L1
Genetics Home Reference (NIH)CWF19L1
Genomic and cartography
GoldenPath hg38 (UCSC)CWF19L1  -     chr10:100232296-100267681 -  10q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CWF19L1  -     10q24.31   [Description]    (hg19-Feb_2009)
EnsemblCWF19L1 - 10q24.31 [CytoView hg19]  CWF19L1 - 10q24.31 [CytoView hg38]
Mapping of homologs : NCBICWF19L1 [Mapview hg19]  CWF19L1 [Mapview hg38]
OMIM616120   616127   
Gene and transcription
Genbank (Entrez)AK000876 AK001860 AK023984 AK055313 AK097895
RefSeq transcript (Entrez)NM_001303404 NM_001303405 NM_001303406 NM_001303407 NM_018294
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CWF19L1
Cluster EST : UnigeneHs.215502 [ NCBI ]
CGAP (NCI)Hs.215502
Alternative Splicing GalleryENSG00000095485
Gene ExpressionCWF19L1 [ NCBI-GEO ]   CWF19L1 [ EBI - ARRAY_EXPRESS ]   CWF19L1 [ SEEK ]   CWF19L1 [ MEM ]
Gene Expression Viewer (FireBrowse)CWF19L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55280
GTEX Portal (Tissue expression)CWF19L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YN2
Splice isoforms : SwissVarQ69YN2
PhosPhoSitePlusQ69YN2
Domains : Interpro (EBI)Cwf19-like_C_dom-1    Cwf19-like_C_dom-2    HIT-like    Metallo-depent_PP-like   
Domain families : Pfam (Sanger)CwfJ_C_1 (PF04677)    CwfJ_C_2 (PF04676)   
Domain families : Pfam (NCBI)pfam04677    pfam04676   
Conserved Domain (NCBI)CWF19L1
DMDM Disease mutations55280
Blocks (Seattle)CWF19L1
SuperfamilyQ69YN2
Human Protein AtlasENSG00000095485
Peptide AtlasQ69YN2
HPRD13101
IPIIPI00101600   IPI00386343   IPI00478313   IPI01015536   
Protein Interaction databases
DIP (DOE-UCLA)Q69YN2
IntAct (EBI)Q69YN2
FunCoupENSG00000095485
BioGRIDCWF19L1
STRING (EMBL)CWF19L1
ZODIACCWF19L1
Ontologies - Pathways
QuickGOQ69YN2
Ontology : AmiGOmolecular_function  catalytic activity  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  catalytic activity  cellular_component  biological_process  
NDEx NetworkCWF19L1
Atlas of Cancer Signalling NetworkCWF19L1
Wikipedia pathwaysCWF19L1
Orthology - Evolution
OrthoDB55280
GeneTree (enSembl)ENSG00000095485
Phylogenetic Trees/Animal Genes : TreeFamCWF19L1
HOVERGENQ69YN2
HOGENOMQ69YN2
Homologs : HomoloGeneCWF19L1
Homology/Alignments : Family Browser (UCSC)CWF19L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCWF19L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CWF19L1
dbVarCWF19L1
ClinVarCWF19L1
1000_GenomesCWF19L1 
Exome Variant ServerCWF19L1
ExAC (Exome Aggregation Consortium)CWF19L1 (select the gene name)
Genetic variants : HAPMAP55280
Genomic Variants (DGV)CWF19L1 [DGVbeta]
DECIPHERCWF19L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCWF19L1 
Mutations
ICGC Data PortalCWF19L1 
TCGA Data PortalCWF19L1 
Broad Tumor PortalCWF19L1
OASIS PortalCWF19L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCWF19L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCWF19L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CWF19L1
DgiDB (Drug Gene Interaction Database)CWF19L1
DoCM (Curated mutations)CWF19L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CWF19L1 (select a term)
intoGenCWF19L1
Cancer3DCWF19L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616120    616127   
Orphanet23648   
MedgenCWF19L1
Genetic Testing Registry CWF19L1
NextProtQ69YN2 [Medical]
TSGene55280
GENETestsCWF19L1
Target ValidationCWF19L1
Huge Navigator CWF19L1 [HugePedia]
snp3D : Map Gene to Disease55280
BioCentury BCIQCWF19L1
ClinGenCWF19L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55280
Chemical/Pharm GKB GenePA134864340
Clinical trialCWF19L1
Miscellaneous
canSAR (ICR)CWF19L1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCWF19L1
EVEXCWF19L1
GoPubMedCWF19L1
iHOPCWF19L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:56 CEST 2017

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