Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CWF19L2 (CWF19-like 2, cell cycle control (S. pombe))

Identity

Alias_symbol (synonym)FLJ32343
Other alias-
HGNC (Hugo) CWF19L2
LocusID (NCBI) 143884
Atlas_Id 62209
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 107197072 and ends at 107328572 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP32 (11q24.3) / CWF19L2 (11q22.3)CWF19L2 (11q22.3) / C11orf63 (11q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CWF19L2   26508
Cards
Entrez_Gene (NCBI)CWF19L2  143884  CWF19-like 2, cell cycle control (S. pombe)
Aliases
GeneCards (Weizmann)CWF19L2
Ensembl hg19 (Hinxton)ENSG00000152404 [Gene_View]  chr11:107197072-107328572 [Contig_View]  CWF19L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152404 [Gene_View]  chr11:107197072-107328572 [Contig_View]  CWF19L2 [Vega]
ICGC DataPortalENSG00000152404
TCGA cBioPortalCWF19L2
AceView (NCBI)CWF19L2
Genatlas (Paris)CWF19L2
WikiGenes143884
SOURCE (Princeton)CWF19L2
Genetics Home Reference (NIH)CWF19L2
Genomic and cartography
GoldenPath hg19 (UCSC)CWF19L2  -     chr11:107197072-107328572 -  11q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CWF19L2  -     11q22.3   [Description]    (hg38-Dec_2013)
EnsemblCWF19L2 - 11q22.3 [CytoView hg19]  CWF19L2 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBICWF19L2 [Mapview hg19]  CWF19L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI148333 AK056905 AK126881 AK293001 BC016611
RefSeq transcript (Entrez)NM_152434
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)CWF19L2
Cluster EST : UnigeneHs.212140 [ NCBI ]
CGAP (NCI)Hs.212140
Alternative Splicing GalleryENSG00000152404
Gene ExpressionCWF19L2 [ NCBI-GEO ]   CWF19L2 [ EBI - ARRAY_EXPRESS ]   CWF19L2 [ SEEK ]   CWF19L2 [ MEM ]
Gene Expression Viewer (FireBrowse)CWF19L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143884
GTEX Portal (Tissue expression)CWF19L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TBE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TBE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TBE0
Splice isoforms : SwissVarQ2TBE0
PhosPhoSitePlusQ2TBE0
Domains : Interpro (EBI)Cwf19-like_C_dom-1    Cwf19-like_C_dom-2    HIT-like   
Domain families : Pfam (Sanger)CwfJ_C_1 (PF04677)    CwfJ_C_2 (PF04676)   
Domain families : Pfam (NCBI)pfam04677    pfam04676   
Conserved Domain (NCBI)CWF19L2
DMDM Disease mutations143884
Blocks (Seattle)CWF19L2
SuperfamilyQ2TBE0
Human Protein AtlasENSG00000152404
Peptide AtlasQ2TBE0
HPRD13102
IPIIPI00065515   IPI00878006   IPI00879290   IPI00937846   
Protein Interaction databases
DIP (DOE-UCLA)Q2TBE0
IntAct (EBI)Q2TBE0
FunCoupENSG00000152404
BioGRIDCWF19L2
STRING (EMBL)CWF19L2
ZODIACCWF19L2
Ontologies - Pathways
QuickGOQ2TBE0
Ontology : AmiGOcatalytic activity  metabolic process  
Ontology : EGO-EBIcatalytic activity  metabolic process  
NDEx NetworkCWF19L2
Atlas of Cancer Signalling NetworkCWF19L2
Wikipedia pathwaysCWF19L2
Orthology - Evolution
OrthoDB143884
GeneTree (enSembl)ENSG00000152404
Phylogenetic Trees/Animal Genes : TreeFamCWF19L2
HOVERGENQ2TBE0
HOGENOMQ2TBE0
Homologs : HomoloGeneCWF19L2
Homology/Alignments : Family Browser (UCSC)CWF19L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCWF19L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CWF19L2
dbVarCWF19L2
ClinVarCWF19L2
1000_GenomesCWF19L2 
Exome Variant ServerCWF19L2
ExAC (Exome Aggregation Consortium)CWF19L2 (select the gene name)
Genetic variants : HAPMAP143884
Genomic Variants (DGV)CWF19L2 [DGVbeta]
DECIPHER (Syndromes)11:107197072-107328572  ENSG00000152404
CONAN: Copy Number AnalysisCWF19L2 
Mutations
ICGC Data PortalCWF19L2 
TCGA Data PortalCWF19L2 
Broad Tumor PortalCWF19L2
OASIS PortalCWF19L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCWF19L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCWF19L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CWF19L2
DgiDB (Drug Gene Interaction Database)CWF19L2
DoCM (Curated mutations)CWF19L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CWF19L2 (select a term)
intoGenCWF19L2
Cancer3DCWF19L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCWF19L2
Genetic Testing Registry CWF19L2
NextProtQ2TBE0 [Medical]
TSGene143884
GENETestsCWF19L2
Huge Navigator CWF19L2 [HugePedia]
snp3D : Map Gene to Disease143884
BioCentury BCIQCWF19L2
ClinGenCWF19L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143884
Chemical/Pharm GKB GenePA134914164
Clinical trialCWF19L2
Miscellaneous
canSAR (ICR)CWF19L2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCWF19L2
EVEXCWF19L2
GoPubMedCWF19L2
iHOPCWF19L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:44 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.