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CWH43 (cell wall biogenesis 43 C-terminal homolog)

Identity

Alias_namescell wall biogenesis 43 C-terminal homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ21511
CWH43-C
Other alias
HGNC (Hugo) CWH43
LocusID (NCBI) 80157
Atlas_Id 62210
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48986642 and ends at 49062078 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100132288 () / CWH43 (4p11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CWH43   26133
Cards
Entrez_Gene (NCBI)CWH43  80157  cell wall biogenesis 43 C-terminal homolog
AliasesCWH43-C
GeneCards (Weizmann)CWH43
Ensembl hg19 (Hinxton)ENSG00000109182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109182 [Gene_View]  chr4:48986642-49062078 [Contig_View]  CWH43 [Vega]
ICGC DataPortalENSG00000109182
TCGA cBioPortalCWH43
AceView (NCBI)CWH43
Genatlas (Paris)CWH43
WikiGenes80157
SOURCE (Princeton)CWH43
Genetics Home Reference (NIH)CWH43
Genomic and cartography
GoldenPath hg38 (UCSC)CWH43  -     chr4:48986642-49062078 +  4p11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CWH43  -     4p11   [Description]    (hg19-Feb_2009)
EnsemblCWH43 - 4p11 [CytoView hg19]  CWH43 - 4p11 [CytoView hg38]
Mapping of homologs : NCBICWH43 [Mapview hg19]  CWH43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI377551 AK025164 AK300495 AK316307 BC137387
RefSeq transcript (Entrez)NM_001286791 NM_025087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CWH43
Cluster EST : UnigeneHs.479703 [ NCBI ]
CGAP (NCI)Hs.479703
Alternative Splicing GalleryENSG00000109182
Gene ExpressionCWH43 [ NCBI-GEO ]   CWH43 [ EBI - ARRAY_EXPRESS ]   CWH43 [ SEEK ]   CWH43 [ MEM ]
Gene Expression Viewer (FireBrowse)CWH43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80157
GTEX Portal (Tissue expression)CWH43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H720   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H720  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H720
Splice isoforms : SwissVarQ9H720
PhosPhoSitePlusQ9H720
Domains : Interpro (EBI)Endo/exonuclease/phosphatase    PGAP2IP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CWH43
DMDM Disease mutations80157
Blocks (Seattle)CWH43
SuperfamilyQ9H720
Human Protein AtlasENSG00000109182
Peptide AtlasQ9H720
HPRD08638
IPIIPI00302872   IPI00965639   IPI00965894   
Protein Interaction databases
DIP (DOE-UCLA)Q9H720
IntAct (EBI)Q9H720
FunCoupENSG00000109182
BioGRIDCWH43
STRING (EMBL)CWH43
ZODIACCWH43
Ontologies - Pathways
QuickGOQ9H720
Ontology : AmiGOGPI anchor biosynthetic process  integral component of membrane  
Ontology : EGO-EBIGPI anchor biosynthetic process  integral component of membrane  
NDEx NetworkCWH43
Atlas of Cancer Signalling NetworkCWH43
Wikipedia pathwaysCWH43
Orthology - Evolution
OrthoDB80157
GeneTree (enSembl)ENSG00000109182
Phylogenetic Trees/Animal Genes : TreeFamCWH43
HOVERGENQ9H720
HOGENOMQ9H720
Homologs : HomoloGeneCWH43
Homology/Alignments : Family Browser (UCSC)CWH43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCWH43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CWH43
dbVarCWH43
ClinVarCWH43
1000_GenomesCWH43 
Exome Variant ServerCWH43
ExAC (Exome Aggregation Consortium)CWH43 (select the gene name)
Genetic variants : HAPMAP80157
Genomic Variants (DGV)CWH43 [DGVbeta]
DECIPHERCWH43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCWH43 
Mutations
ICGC Data PortalCWH43 
TCGA Data PortalCWH43 
Broad Tumor PortalCWH43
OASIS PortalCWH43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCWH43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCWH43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CWH43
DgiDB (Drug Gene Interaction Database)CWH43
DoCM (Curated mutations)CWH43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CWH43 (select a term)
intoGenCWH43
Cancer3DCWH43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCWH43
Genetic Testing Registry CWH43
NextProtQ9H720 [Medical]
TSGene80157
GENETestsCWH43
Target ValidationCWH43
Huge Navigator CWH43 [HugePedia]
snp3D : Map Gene to Disease80157
BioCentury BCIQCWH43
ClinGenCWH43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80157
Chemical/Pharm GKB GenePA165663488
Clinical trialCWH43
Miscellaneous
canSAR (ICR)CWH43 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCWH43
EVEXCWH43
GoPubMedCWH43
iHOPCWH43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:38 CEST 2017

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