Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CXCL1 (C-X-C motif chemokine ligand 1)

Identity

Other namesFSP
GRO1
GROa
MGSA
MGSA-a
NAP-3
SCYB1
HGNC (Hugo) CXCL1
LocusID (NCBI) 2919
Atlas_Id 40217
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 74735109 and ends at 74737019 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		DNALI1 (1p34.3) / CXCL1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXCL1   4602
Cards
Entrez_Gene (NCBI)CXCL1  2919  C-X-C motif chemokine ligand 1
AliasesFSP; GRO1; GROa; MGSA; 
MGSA-a; NAP-3; SCYB1
GeneCards (Weizmann)CXCL1
Ensembl hg19 (Hinxton)ENSG00000163739 [Gene_View]  chr4:74735109-74737019 [Contig_View]  CXCL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163739 [Gene_View]  chr4:74735109-74737019 [Contig_View]  CXCL1 [Vega]
ICGC DataPortalENSG00000163739
TCGA cBioPortalCXCL1
AceView (NCBI)CXCL1
Genatlas (Paris)CXCL1
WikiGenes2919
SOURCE (Princeton)CXCL1
Genomic and cartography
GoldenPath hg19 (UCSC)CXCL1  -     chr4:74735109-74737019 +  4q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CXCL1  -     4q13.3   [Description]    (hg38-Dec_2013)
EnsemblCXCL1 - 4q13.3 [CytoView hg19]  CXCL1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBICXCL1 [Mapview hg19]  CXCL1 [Mapview hg38]
OMIM155730   
Gene and transcription
Genbank (Entrez)BC011976 BG121608 BM554448 BM996663 BQ000742
RefSeq transcript (Entrez)NM_001511
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CXCL1
Cluster EST : UnigeneHs.708652 [ NCBI ]
CGAP (NCI)Hs.708652
Alternative Splicing GalleryENSG00000163739
Gene ExpressionCXCL1 [ NCBI-GEO ]   CXCL1 [ EBI - ARRAY_EXPRESS ]   CXCL1 [ SEEK ]   CXCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CXCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2919
GTEX Portal (Tissue expression)CXCL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09341 (Uniprot)
NextProtP09341  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09341
Splice isoforms : SwissVarP09341 (Swissvar)
PhosPhoSitePlusP09341
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CXC (PS00471)   
Domains : Interpro (EBI)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM Disease mutations2919
Blocks (Seattle)CXCL1
PDB (SRS)1MGS    1MSG    1MSH    1ROD   
PDB (PDBSum)1MGS    1MSG    1MSH    1ROD   
PDB (IMB)1MGS    1MSG    1MSH    1ROD   
PDB (RSDB)1MGS    1MSG    1MSH    1ROD   
Structural Biology KnowledgeBase1MGS    1MSG    1MSH    1ROD   
SCOP (Structural Classification of Proteins)1MGS    1MSG    1MSH    1ROD   
CATH (Classification of proteins structures)1MGS    1MSG    1MSH    1ROD   
SuperfamilyP09341
Human Protein AtlasENSG00000163739
Peptide AtlasP09341
HPRD01119
IPIIPI00013874   
Protein Interaction databases
DIP (DOE-UCLA)P09341
IntAct (EBI)P09341
FunCoupENSG00000163739
BioGRIDCXCL1
STRING (EMBL)CXCL1
ZODIACCXCL1
Ontologies - Pathways
QuickGOP09341
Ontology : AmiGOreceptor binding  extracellular region  extracellular space  intracellular  chemotaxis  inflammatory response  immune response  signal transduction  G-protein coupled receptor signaling pathway  nervous system development  chemokine activity  enzyme activator activity  growth factor activity  cell proliferation  negative regulation of cell proliferation  actin cytoskeleton organization  response to lipopolysaccharide  intracellular signal transduction  positive regulation of catalytic activity  CXCR chemokine receptor binding  cell chemotaxis  cell chemotaxis  chemokine-mediated signaling pathway  positive regulation of neutrophil chemotaxis  
Ontology : EGO-EBIreceptor binding  extracellular region  extracellular space  intracellular  chemotaxis  inflammatory response  immune response  signal transduction  G-protein coupled receptor signaling pathway  nervous system development  chemokine activity  enzyme activator activity  growth factor activity  cell proliferation  negative regulation of cell proliferation  actin cytoskeleton organization  response to lipopolysaccharide  intracellular signal transduction  positive regulation of catalytic activity  CXCR chemokine receptor binding  cell chemotaxis  cell chemotaxis  chemokine-mediated signaling pathway  positive regulation of neutrophil chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    NOD-like receptor signaling pathway    TNF signaling pathway    Epithelial cell signaling in Helicobacter pylori infection    Salmonella infection    Legionellosis    Amoebiasis    Rheumatoid arthritis   
NDEx NetworkCXCL1
Atlas of Cancer Signalling NetworkCXCL1
Wikipedia pathwaysCXCL1
Orthology - Evolution
OrthoDB2919
GeneTree (enSembl)ENSG00000163739
Phylogenetic Trees/Animal Genes : TreeFamCXCL1
Homologs : HomoloGeneCXCL1
Homology/Alignments : Family Browser (UCSC)CXCL1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCXCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXCL1
dbVarCXCL1
ClinVarCXCL1
1000_GenomesCXCL1 
Exome Variant ServerCXCL1
ExAC (Exome Aggregation Consortium)CXCL1 (select the gene name)
Genetic variants : HAPMAP2919
Genomic Variants (DGV)CXCL1 [DGVbeta]
Mutations
ICGC Data PortalCXCL1 
TCGA Data PortalCXCL1 
Broad Tumor PortalCXCL1
OASIS PortalCXCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXCL1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CXCL1
DgiDB (Drug Gene Interaction Database)CXCL1
DoCM (Curated mutations)CXCL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXCL1 (select a term)
intoGenCXCL1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:74735109-74737019  ENSG00000163739
CONAN: Copy Number AnalysisCXCL1 
Mutations and Diseases : HGMDCXCL1
OMIM155730   
MedgenCXCL1
Genetic Testing Registry CXCL1
NextProtP09341 [Medical]
TSGene2919
GENETestsCXCL1
Huge Navigator CXCL1 [HugePedia]
snp3D : Map Gene to Disease2919
BioCentury BCIQCXCL1
ClinGenCXCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2919
Chemical/Pharm GKB GenePA35050
Clinical trialCXCL1
Miscellaneous
canSAR (ICR)CXCL1 (select the gene name)
Probes
Litterature
PubMed176 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXCL1
EVEXCXCL1
GoPubMedCXCL1
iHOPCXCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:44:48 CEST 2016
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