Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CXCL1 (C-X-C motif chemokine ligand 1)

Identity

Alias_namesalpha
MGSA
GRO1
FSP
Alias_symbol (synonym)SCYB1
GROa
MGSA-a
NAP-3
Other alias
HGNC (Hugo) CXCL1
LocusID (NCBI) 2919
Atlas_Id 40217
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 73869392 and ends at 73871302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNALI1 (1p34.3) / CXCL1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXCL1   4602
Cards
Entrez_Gene (NCBI)CXCL1  2919  C-X-C motif chemokine ligand 1
AliasesFSP; GRO1; GROa; MGSA; 
MGSA-a; NAP-3; SCYB1
GeneCards (Weizmann)CXCL1
Ensembl hg19 (Hinxton)ENSG00000163739 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163739 [Gene_View]  chr4:73869392-73871302 [Contig_View]  CXCL1 [Vega]
ICGC DataPortalENSG00000163739
TCGA cBioPortalCXCL1
AceView (NCBI)CXCL1
Genatlas (Paris)CXCL1
WikiGenes2919
SOURCE (Princeton)CXCL1
Genetics Home Reference (NIH)CXCL1
Genomic and cartography
GoldenPath hg38 (UCSC)CXCL1  -     chr4:73869392-73871302 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXCL1  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblCXCL1 - 4q13.3 [CytoView hg19]  CXCL1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBICXCL1 [Mapview hg19]  CXCL1 [Mapview hg38]
OMIM155730   
Gene and transcription
Genbank (Entrez)BC011976 BG121608 BM554448 BM996663 BQ000742
RefSeq transcript (Entrez)NM_001511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXCL1
Cluster EST : UnigeneHs.708652 [ NCBI ]
CGAP (NCI)Hs.708652
Alternative Splicing GalleryENSG00000163739
Gene ExpressionCXCL1 [ NCBI-GEO ]   CXCL1 [ EBI - ARRAY_EXPRESS ]   CXCL1 [ SEEK ]   CXCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CXCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2919
GTEX Portal (Tissue expression)CXCL1
Human Protein AtlasENSG00000163739-CXCL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09341   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09341  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09341
Splice isoforms : SwissVarP09341
PhosPhoSitePlusP09341
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CXC (PS00471)   
Domains : Interpro (EBI)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_IL8-like_dom    CXC_Chemokine_domain   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CXCL1
DMDM Disease mutations2919
Blocks (Seattle)CXCL1
PDB (SRS)1MGS    1MSG    1MSH    1ROD   
PDB (PDBSum)1MGS    1MSG    1MSH    1ROD   
PDB (IMB)1MGS    1MSG    1MSH    1ROD   
PDB (RSDB)1MGS    1MSG    1MSH    1ROD   
Structural Biology KnowledgeBase1MGS    1MSG    1MSH    1ROD   
SCOP (Structural Classification of Proteins)1MGS    1MSG    1MSH    1ROD   
CATH (Classification of proteins structures)1MGS    1MSG    1MSH    1ROD   
SuperfamilyP09341
Human Protein Atlas [tissue]ENSG00000163739-CXCL1 [tissue]
Peptide AtlasP09341
HPRD01119
IPIIPI00013874   
Protein Interaction databases
DIP (DOE-UCLA)P09341
IntAct (EBI)P09341
FunCoupENSG00000163739
BioGRIDCXCL1
STRING (EMBL)CXCL1
ZODIACCXCL1
Ontologies - Pathways
QuickGOP09341
Ontology : AmiGOreceptor binding  extracellular region  extracellular space  chemotaxis  inflammatory response  immune response  signal transduction  G-protein coupled receptor signaling pathway  nervous system development  chemokine activity  enzyme activator activity  growth factor activity  cell proliferation  negative regulation of cell proliferation  regulation of receptor activity  cytokine-mediated signaling pathway  actin cytoskeleton organization  response to lipopolysaccharide  intracellular signal transduction  specific granule lumen  positive regulation of catalytic activity  neutrophil degranulation  CXCR chemokine receptor binding  cell chemotaxis  chemokine-mediated signaling pathway  positive regulation of neutrophil chemotaxis  tertiary granule lumen  
Ontology : EGO-EBIreceptor binding  extracellular region  extracellular space  chemotaxis  inflammatory response  immune response  signal transduction  G-protein coupled receptor signaling pathway  nervous system development  chemokine activity  enzyme activator activity  growth factor activity  cell proliferation  negative regulation of cell proliferation  regulation of receptor activity  cytokine-mediated signaling pathway  actin cytoskeleton organization  response to lipopolysaccharide  intracellular signal transduction  specific granule lumen  positive regulation of catalytic activity  neutrophil degranulation  CXCR chemokine receptor binding  cell chemotaxis  chemokine-mediated signaling pathway  positive regulation of neutrophil chemotaxis  tertiary granule lumen  
Pathways : KEGGCytokine-cytokine receptor interaction    Epithelial cell signaling in Helicobacter pylori infection   
NDEx NetworkCXCL1
Atlas of Cancer Signalling NetworkCXCL1
Wikipedia pathwaysCXCL1
Orthology - Evolution
OrthoDB2919
GeneTree (enSembl)ENSG00000163739
Phylogenetic Trees/Animal Genes : TreeFamCXCL1
HOVERGENP09341
HOGENOMP09341
Homologs : HomoloGeneCXCL1
Homology/Alignments : Family Browser (UCSC)CXCL1
Gene fusions - Rearrangements
Fusion : QuiverCXCL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXCL1
dbVarCXCL1
ClinVarCXCL1
1000_GenomesCXCL1 
Exome Variant ServerCXCL1
ExAC (Exome Aggregation Consortium)ENSG00000163739
GNOMAD BrowserENSG00000163739
Genetic variants : HAPMAP2919
Genomic Variants (DGV)CXCL1 [DGVbeta]
DECIPHERCXCL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXCL1 
Mutations
ICGC Data PortalCXCL1 
TCGA Data PortalCXCL1 
Broad Tumor PortalCXCL1
OASIS PortalCXCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXCL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXCL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CXCL1
DgiDB (Drug Gene Interaction Database)CXCL1
DoCM (Curated mutations)CXCL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXCL1 (select a term)
intoGenCXCL1
Cancer3DCXCL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM155730   
Orphanet
DisGeNETCXCL1
MedgenCXCL1
Genetic Testing Registry CXCL1
NextProtP09341 [Medical]
TSGene2919
GENETestsCXCL1
Target ValidationCXCL1
Huge Navigator CXCL1 [HugePedia]
snp3D : Map Gene to Disease2919
BioCentury BCIQCXCL1
ClinGenCXCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2919
Chemical/Pharm GKB GenePA35050
Clinical trialCXCL1
Miscellaneous
canSAR (ICR)CXCL1 (select the gene name)
Probes
Litterature
PubMed210 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXCL1
EVEXCXCL1
GoPubMedCXCL1
iHOPCXCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon May 14 11:40:16 CEST 2018
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