Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXCL3 (chemokine (C-X-C motif) ligand 3)

Identity

Other namesCINC-2b
GRO3
GROg
MIP-2b
MIP2B
SCYB3
HGNC (Hugo) CXCL3
LocusID (NCBI) 2921
Location 4q13.3
Location_base_pair Starts at 74902312 and ends at 74904490 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXCL3   4604
Cards
Entrez_Gene (NCBI)CXCL3  2921  chemokine (C-X-C motif) ligand 3
GeneCards (Weizmann)CXCL3
Ensembl (Hinxton)ENSG00000163734 [Gene_View]  chr4:74902312-74904490 [Contig_View]  CXCL3 [Vega]
ICGC DataPortalENSG00000163734
AceView (NCBI)CXCL3
Genatlas (Paris)CXCL3
WikiGenes2921
SOURCE (Princeton)NM_002090
Genomic and cartography
GoldenPath (UCSC)CXCL3  -  4q13.3   chr4:74902312-74904490 -  4q13.3   [Description]    (hg19-Feb_2009)
EnsemblCXCL3 - 4q13.3 [CytoView]
Mapping of homologs : NCBICXCL3 [Mapview]
OMIM139111   
Gene and transcription
Genbank (Entrez)AK307064 AK311367 AW079760 BC016308 BC065743
RefSeq transcript (Entrez)NM_002090
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838914 NW_004929320
Consensus coding sequences : CCDS (NCBI)CXCL3
Cluster EST : UnigeneHs.89690 [ NCBI ]
CGAP (NCI)Hs.89690
Alternative Splicing : Fast-db (Paris)GSHG0023319
Alternative Splicing GalleryENSG00000163734
Gene ExpressionCXCL3 [ NCBI-GEO ]     CXCL3 [ SEEK ]   CXCL3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19876 (Uniprot)
NextProtP19876  [Medical]
With graphics : InterProP19876
Splice isoforms : SwissVarP19876 (Swissvar)
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CXC (PS00471)   
Domains : Interpro (EBI)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_IL8-like_dom   
Related proteins : CluSTrP19876
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM Disease mutations2921
Blocks (Seattle)P19876
Human Protein AtlasENSG00000163734
Peptide AtlasP19876
HPRD00742
IPIIPI00218180   
Protein Interaction databases
DIP (DOE-UCLA)P19876
IntAct (EBI)P19876
FunCoupENSG00000163734
BioGRIDCXCL3
IntegromeDBCXCL3
STRING (EMBL)CXCL3
Ontologies - Pathways
QuickGOP19876
Ontology : AmiGOextracellular region  extracellular space  inflammatory response  immune response  chemokine activity  neutrophil chemotaxis  
Ontology : EGO-EBIextracellular region  extracellular space  inflammatory response  immune response  chemokine activity  neutrophil chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    TNF signaling pathway    Salmonella infection    Legionellosis   
Protein Interaction DatabaseCXCL3
Wikipedia pathwaysCXCL3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CXCL3
SNP (GeneSNP Utah)CXCL3
SNP : HGBaseCXCL3
Genetic variants : HAPMAPCXCL3
1000_GenomesCXCL3 
ICGC programENSG00000163734 
CONAN: Copy Number AnalysisCXCL3 
Somatic Mutations in Cancer : COSMICCXCL3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)4:74902312-74904490
Mutations and Diseases : HGMDCXCL3
OMIM139111   
MedgenCXCL3
GENETestsCXCL3
Disease Genetic AssociationCXCL3
Huge Navigator CXCL3 [HugePedia]  CXCL3 [HugeCancerGEM]
Genomic VariantsCXCL3  CXCL3 [DGVbeta]
Exome VariantCXCL3
dbVarCXCL3
ClinVarCXCL3
snp3D : Map Gene to Disease2921
General knowledge
Homologs : HomoloGeneCXCL3
Homology/Alignments : Family Browser (UCSC)CXCL3
Phylogenetic Trees/Animal Genes : TreeFamCXCL3
Chemical/Protein Interactions : CTD2921
Chemical/Pharm GKB GenePA35052
Clinical trialCXCL3
Cancer Resource (Charite)ENSG00000163734
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineCXCL3
GoPubMedCXCL3
iHOPCXCL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:20:51 CET 2014

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