Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CXCL3 (chemokine (C-X-C motif) ligand 3)

Identity

Other namesCINC-2b
GRO3
GROg
MIP-2b
MIP2B
SCYB3
HGNC (Hugo) CXCL3
LocusID (NCBI) 2921
Location 4q13.3
Location_base_pair Starts at 74902312 and ends at 74904490 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXCL3   4604
Entrez_Gene (NCBI)CXCL3  2921  chemokine (C-X-C motif) ligand 3
Cards
GeneCards (Weizmann)CXCL3
Ensembl (Hinxton)ENSG00000163734 [Gene_View]  chr4:74902312-74904490 [Contig_View]  CXCL3 [Vega]
AceView (NCBI)CXCL3
Genatlas (Paris)CXCL3
SOURCE (Stanford)NM_002090
Genomic and cartography
GoldenPath (UCSC)CXCL3  -  4q13.3   chr4:74902312-74904490 -  4q13.3   [Description]    (hg19-Feb_2009)
EnsemblCXCL3 - 4q13.3 [CytoView]
Mapping of homologs : NCBICXCL3 [Mapview]
OMIM139111   
Gene and transcription
Genbank (Entrez)AK307064 AK311367 AW079760 BC016308 BC065743
RefSeq transcript (SRS)NM_002090
RefSeq transcript (Entrez)NM_002090
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_022778 NW_001838914 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_022778 NW_001838914 NW_004078021
Consensus coding sequences : CCDS (NCBI)CXCL3
Cluster EST : UnigeneHs.89690 [ SRS ] Hs.89690 [ NCBI ]
CGAP (NCI)Hs.89690
Alternative Splicing : Fast-db (Paris)GSHG0023319
Alternative Splicing GalleryENSG00000163734
Gene ExpressionCXCL3 [ NCBI-GEO ]   CXCL3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19876 (SRS) P19876 (Uniprot)
NextProtP19876
With graphics : InterProP19876
Splice isoforms : SwissVarP19876(Swissvar)
Domaine pattern : Prosite (SRS)SMALL_CYTOKINES_CXC (PS00471)   
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CXC (PS00471)   
Domains : Interpro (SRS)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_CXCL8/IL8    Chemokine_IL8-like_dom   
Domains : Interpro (EBI)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_CXCL8/IL8    Chemokine_IL8-like_dom   
Related proteins : CluSTrP19876
Domain families : Pfam (SRS)IL8 (PF00048)   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM2921
Blocks (Seattle)P19876
Human Protein AtlasENSG00000163734
HPRD00742
IPIIPI00218180   
Protein Interaction databases
DIP (DOE-UCLA)P19876
IntAct (EBI)P19876
FunCoupENSG00000163734
REACTOMECXCL3
Protein Interaction Database2921
BioGRIDCXCL3
InParanoidP19876
Interologous Interaction database P19876
IntegromeDBCXCL3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CXCL3
SNP (GeneSNP Utah)CXCL3
SNP : HGBaseCXCL3
Genetic variants : HAPMAPCXCL3
Somatic Mutations in Cancer : COSMICCXCL3 
CONAN: Copy Number AnalysisCXCL3 
Mutations and Diseases : HGMDCXCL3
OMIM139111   
GENETests139111   
Disease Genetic AssociationCXCL3
Huge Navigator CXCL3 [HugePedia]  CXCL3 [HugeCancerGEM]
Genomic VariantsCXCL3  CXCL3 [DGVbeta]
snp3D : Map Gene to Disease2921
General knowledge
Homologs : HomoloGeneCXCL3
Homology/Alignments : Family Browser (UCSC)CXCL3
Phylogenetic Trees/Animal Genes : TreeFamCXCL3
Chemical/Protein Interactions : CTD2921
Chemical/Pharm GKB GenePA35052
Clinical trialCXCL3
Cancer Resource (Charite)ENSG00000163734
Ontology : AmiGOextracellular region  extracellular space  inflammatory response  immune response  chemokine activity  neutrophil chemotaxis  
Ontology : EGO-EBIextracellular region  extracellular space  inflammatory response  immune response  chemokine activity  neutrophil chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
PubGeneCXCL3
iHOPCXCL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:44 CEST 2013
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