Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CXCL6 (chemokine (C-X-C motif) ligand 6)

Identity

Other namesCKA-3
GCP-2
GCP2
SCYB6
HGNC (Hugo) CXCL6
LocusID (NCBI) 6372
Location 4q13.3
Location_base_pair Starts at 74702273 and ends at 74704477 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXCL6   10643
Entrez_Gene (NCBI)CXCL6  6372  chemokine (C-X-C motif) ligand 6
Cards
GeneCards (Weizmann)CXCL6
Ensembl (Hinxton)ENSG00000124875 [Gene_View]  chr4:74702273-74704477 [Contig_View]  CXCL6 [Vega]
AceView (NCBI)CXCL6
Genatlas (Paris)CXCL6
SOURCE (Stanford)NM_002993
Genomic and cartography
GoldenPath (UCSC)CXCL6  -  4q13.3   chr4:74702273-74704477 +  4q13.3   [Description]    (hg19-Feb_2009)
EnsemblCXCL6 - 4q13.3 [CytoView]
Mapping of homologs : NCBICXCL6 [Mapview]
OMIM138965   
Gene and transcription
Genbank (Entrez)AK311981 BC013744 BP204144 DQ891500 DQ894692
RefSeq transcript (SRS)NM_002993
RefSeq transcript (Entrez)NM_002993
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_022778 NW_001838914 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_022778 NW_001838914 NW_004078021
Consensus coding sequences : CCDS (NCBI)CXCL6
Cluster EST : UnigeneHs.164021 [ SRS ] Hs.164021 [ NCBI ]
CGAP (NCI)Hs.164021
Alternative Splicing : Fast-db (Paris)GSHG0022656
Alternative Splicing GalleryENSG00000124875
Gene ExpressionCXCL6 [ NCBI-GEO ]   CXCL6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP80162 (SRS) P80162 (Uniprot)
NextProtP80162
With graphics : InterProP80162
Splice isoforms : SwissVarP80162(Swissvar)
Domaine pattern : Prosite (SRS)SMALL_CYTOKINES_CXC (PS00471)   
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CXC (PS00471)   
Domains : Interpro (SRS)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_CXCL8/IL8    Chemokine_IL8-like_dom   
Domains : Interpro (EBI)Chemokine_CXC    Chemokine_CXC_CS    Chemokine_CXCL8/IL8    Chemokine_IL8-like_dom   
Related proteins : CluSTrP80162
Domain families : Pfam (SRS)IL8 (PF00048)   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM6372
Blocks (Seattle)P80162
Human Protein AtlasENSG00000124875
HPRD00735
IPIIPI00008079   IPI00177494   IPI00964487   
Protein Interaction databases
DIP (DOE-UCLA)P80162
IntAct (EBI)P80162
FunCoupENSG00000124875
REACTOMECXCL6
Protein Interaction Database6372
BioGRIDCXCL6
InParanoidP80162
Interologous Interaction database P80162
IntegromeDBCXCL6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CXCL6
SNP (GeneSNP Utah)CXCL6
SNP : HGBaseCXCL6
Genetic variants : HAPMAPCXCL6
Somatic Mutations in Cancer : COSMICCXCL6 
CONAN: Copy Number AnalysisCXCL6 
Mutations and Diseases : HGMDCXCL6
OMIM138965   
GENETests138965   
Disease Genetic AssociationCXCL6
Huge Navigator CXCL6 [HugePedia]  CXCL6 [HugeCancerGEM]
Genomic VariantsCXCL6  CXCL6 [DGVbeta]
snp3D : Map Gene to Disease6372
General knowledge
Homologs : HomoloGeneCXCL6
Homology/Alignments : Family Browser (UCSC)CXCL6
Phylogenetic Trees/Animal Genes : TreeFamCXCL6
Chemical/Protein Interactions : CTD6372
Chemical/Pharm GKB GenePA35574
Clinical trialCXCL6
Cancer Resource (Charite)ENSG00000124875
Ontology : AmiGOextracellular region  extracellular space  chemotaxis  inflammatory response  immune response  signal transduction  cell-cell signaling  chemokine activity  heparin binding  
Ontology : EGO-EBIextracellular region  extracellular space  chemotaxis  inflammatory response  immune response  signal transduction  cell-cell signaling  chemokine activity  heparin binding  
Pathways : KEGGCytokine-cytokine receptor interaction
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
PubGeneCXCL6
iHOPCXCL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:52 CEST 2013
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