Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXXC1P1 (CXXC finger protein 1 pseudogene 1)

Identity

Alias_namesCXorf25
NCRNA00236
chromosome X open reading frame 25
non-protein coding RNA 236
CXXC finger 1 pseudogene 1
Alias_symbol (synonym)FLJ36789
Other alias
HGNC (Hugo) CXXC1P1
LocusID (NCBI) 392459
Atlas_Id 62231
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 47707191 and ends at 47736628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXXC1P1   27864
Cards
Entrez_Gene (NCBI)CXXC1P1  392459  CXXC finger protein 1 pseudogene 1
AliasesCXorf25; NCRNA00236
GeneCards (Weizmann)CXXC1P1
Ensembl hg19 (Hinxton)ENSG00000187893 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187893 [Gene_View]  chrX:47707191-47736628 [Contig_View]  CXXC1P1 [Vega]
ICGC DataPortalENSG00000187893
TCGA cBioPortalCXXC1P1
AceView (NCBI)CXXC1P1
Genatlas (Paris)CXXC1P1
WikiGenes392459
SOURCE (Princeton)CXXC1P1
Genetics Home Reference (NIH)CXXC1P1
Genomic and cartography
GoldenPath hg38 (UCSC)CXXC1P1  -     chrX:47707191-47736628 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXXC1P1  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblCXXC1P1 - Xp11.23 [CytoView hg19]  CXXC1P1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBICXXC1P1 [Mapview hg19]  CXXC1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094108
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXXC1P1
Cluster EST : UnigeneHs.562045 [ NCBI ]
CGAP (NCI)Hs.562045
Alternative Splicing GalleryENSG00000187893
Gene ExpressionCXXC1P1 [ NCBI-GEO ]   CXXC1P1 [ EBI - ARRAY_EXPRESS ]   CXXC1P1 [ SEEK ]   CXXC1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)CXXC1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)392459
GTEX Portal (Tissue expression)CXXC1P1
Human Protein AtlasENSG00000187893-CXXC1P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXXC1P1
DMDM Disease mutations392459
Blocks (Seattle)CXXC1P1
Human Protein Atlas [tissue]ENSG00000187893-CXXC1P1 [tissue]
Protein Interaction databases
FunCoupENSG00000187893
BioGRIDCXXC1P1
STRING (EMBL)CXXC1P1
ZODIACCXXC1P1
Ontologies - Pathways
Huge Navigator CXXC1P1 [HugePedia]
snp3D : Map Gene to Disease392459
BioCentury BCIQCXXC1P1
ClinGenCXXC1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392459
Chemical/Pharm GKB GenePA134958275
Clinical trialCXXC1P1
Miscellaneous
canSAR (ICR)CXXC1P1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXXC1P1
EVEXCXXC1P1
GoPubMedCXXC1P1
iHOPCXXC1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:43:48 CET 2017

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