Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXXC4 (CXXC finger protein 4)

Identity

Other namesIDAX
HGNC (Hugo) CXXC4
LocusID (NCBI) 80319
Atlas_Id 40226
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 105389463 and ends at 105416058 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
INTS12 (4q24) / CXXC4 (4q24)INTS12 4q24 / CXXC4 4q24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXXC4   24593
Cards
Entrez_Gene (NCBI)CXXC4  80319  CXXC finger protein 4
AliasesIDAX
GeneCards (Weizmann)CXXC4
Ensembl hg19 (Hinxton)ENSG00000168772 [Gene_View]  chr4:105389463-105416058 [Contig_View]  CXXC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168772 [Gene_View]  chr4:105389463-105416058 [Contig_View]  CXXC4 [Vega]
ICGC DataPortalENSG00000168772
TCGA cBioPortalCXXC4
AceView (NCBI)CXXC4
Genatlas (Paris)CXXC4
WikiGenes80319
SOURCE (Princeton)CXXC4
Genomic and cartography
GoldenPath hg19 (UCSC)CXXC4  -     chr4:105389463-105416058 -  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CXXC4  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblCXXC4 - 4q24 [CytoView hg19]  CXXC4 - 4q24 [CytoView hg38]
Mapping of homologs : NCBICXXC4 [Mapview hg19]  CXXC4 [Mapview hg38]
OMIM611645   
Gene and transcription
Genbank (Entrez)AA708035 AF272159 AK093871 AK125395 AK127778
RefSeq transcript (Entrez)NM_025212
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CXXC4
Cluster EST : UnigeneHs.624057 [ NCBI ]
CGAP (NCI)Hs.624057
Alternative Splicing GalleryENSG00000168772
Gene ExpressionCXXC4 [ NCBI-GEO ]   CXXC4 [ EBI - ARRAY_EXPRESS ]   CXXC4 [ SEEK ]   CXXC4 [ MEM ]
Gene Expression Viewer (FireBrowse)CXXC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80319
GTEX Portal (Tissue expression)CXXC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2H0 (Uniprot)
NextProtQ9H2H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2H0
Splice isoforms : SwissVarQ9H2H0 (Swissvar)
PhosPhoSitePlusQ9H2H0
Domaine pattern : Prosite (Expaxy)ZF_CXXC (PS51058)   
Domains : Interpro (EBI)Znf_CXXC   
Domain families : Pfam (Sanger)zf-CXXC (PF02008)   
Domain families : Pfam (NCBI)pfam02008   
DMDM Disease mutations80319
Blocks (Seattle)CXXC4
SuperfamilyQ9H2H0
Human Protein AtlasENSG00000168772
Peptide AtlasQ9H2H0
HPRD16773
IPIIPI00018828   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2H0
IntAct (EBI)Q9H2H0
FunCoupENSG00000168772
BioGRIDCXXC4
STRING (EMBL)CXXC4
ZODIACCXXC4
Ontologies - Pathways
QuickGOQ9H2H0
Ontology : AmiGODNA binding  cytoplasm  zygotic specification of dorsal/ventral axis  zinc ion binding  Wnt signaling pathway  PDZ domain binding  negative regulation of Wnt signaling pathway  cytoplasmic vesicle  
Ontology : EGO-EBIDNA binding  cytoplasm  zygotic specification of dorsal/ventral axis  zinc ion binding  Wnt signaling pathway  PDZ domain binding  negative regulation of Wnt signaling pathway  cytoplasmic vesicle  
Pathways : KEGGWnt signaling pathway   
NDEx Network
Atlas of Cancer Signalling NetworkCXXC4
Wikipedia pathwaysCXXC4
Orthology - Evolution
OrthoDB80319
GeneTree (enSembl)ENSG00000168772
Phylogenetic Trees/Animal Genes : TreeFamCXXC4
Homologs : HomoloGeneCXXC4
Homology/Alignments : Family Browser (UCSC)CXXC4
Gene fusions - Rearrangements
Fusion: TCGAINTS12 4q24 CXXC4 4q24 HNSC
Polymorphisms : SNP, variants
NCBI Variation ViewerCXXC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXXC4
dbVarCXXC4
ClinVarCXXC4
1000_GenomesCXXC4 
Exome Variant ServerCXXC4
ExAC (Exome Aggregation Consortium)CXXC4 (select the gene name)
Genetic variants : HAPMAP80319
Genomic Variants (DGV)CXXC4 [DGVbeta]
Mutations
ICGC Data PortalCXXC4 
TCGA Data PortalCXXC4 
Broad Tumor PortalCXXC4
OASIS PortalCXXC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXXC4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CXXC4
DgiDB (Drug Gene Interaction Database)CXXC4
DoCM (Curated mutations)CXXC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXXC4 (select a term)
intoGenCXXC4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:105389463-105416058  ENSG00000168772
CONAN: Copy Number AnalysisCXXC4 
Mutations and Diseases : HGMDCXXC4
OMIM611645   
MedgenCXXC4
Genetic Testing Registry CXXC4
NextProtQ9H2H0 [Medical]
TSGene80319
GENETestsCXXC4
Huge Navigator CXXC4 [HugePedia]
snp3D : Map Gene to Disease80319
BioCentury BCIQCXXC4
ClinGenCXXC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80319
Chemical/Pharm GKB GenePA134992016
Clinical trialCXXC4
Miscellaneous
canSAR (ICR)CXXC4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXXC4
EVEXCXXC4
GoPubMedCXXC4
iHOPCXXC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:27:58 CEST 2016

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