Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXXC4 (CXXC finger protein 4)

Identity

Other namesIDAX
HGNC (Hugo) CXXC4
LocusID (NCBI) 80319
Atlas_Id 40226
Location 4q24
Location_base_pair Starts at 105389463 and ends at 105416058 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXXC4   24593
Cards
Entrez_Gene (NCBI)CXXC4  80319  CXXC finger protein 4
GeneCards (Weizmann)CXXC4
Ensembl hg19 (Hinxton)ENSG00000168772 [Gene_View]  chr4:105389463-105416058 [Contig_View]  CXXC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168772 [Gene_View]  chr4:105389463-105416058 [Contig_View]  CXXC4 [Vega]
ICGC DataPortalENSG00000168772
TCGA cBioPortalCXXC4
AceView (NCBI)CXXC4
Genatlas (Paris)CXXC4
WikiGenes80319
SOURCE (Princeton)CXXC4
Genomic and cartography
GoldenPath hg19 (UCSC)CXXC4  -     chr4:105389463-105416058 -  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CXXC4  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblCXXC4 - 4q24 [CytoView hg19]  CXXC4 - 4q24 [CytoView hg38]
Mapping of homologs : NCBICXXC4 [Mapview hg19]  CXXC4 [Mapview hg38]
OMIM611645   
Gene and transcription
Genbank (Entrez)AF272159 AK093871 AK125395 AK127778 AK311455
RefSeq transcript (Entrez)NM_025212
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CXXC4
Cluster EST : UnigeneHs.12248 [ NCBI ]
CGAP (NCI)Hs.12248
Alternative Splicing : Fast-db (Paris)GSHG0023452
Alternative Splicing GalleryENSG00000168772
Gene ExpressionCXXC4 [ NCBI-GEO ]     CXXC4 [ SEEK ]   CXXC4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2H0 (Uniprot)
NextProtQ9H2H0  [Medical]  [Publications]
With graphics : InterProQ9H2H0
Splice isoforms : SwissVarQ9H2H0 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZF_CXXC (PS51058)   
Domains : Interpro (EBI)Znf_CXXC   
Related proteins : CluSTrQ9H2H0
Domain families : Pfam (Sanger)zf-CXXC (PF02008)   
Domain families : Pfam (NCBI)pfam02008   
DMDM Disease mutations80319
Blocks (Seattle)Q9H2H0
Human Protein AtlasENSG00000168772
Peptide AtlasQ9H2H0
HPRD16773
IPIIPI00018828   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2H0
IntAct (EBI)Q9H2H0
FunCoupENSG00000168772
BioGRIDCXXC4
IntegromeDBCXXC4
STRING (EMBL)CXXC4
Ontologies - Pathways
QuickGOQ9H2H0
Ontology : AmiGODNA binding  cytoplasm  zygotic specification of dorsal/ventral axis  zinc ion binding  cytoplasmic membrane-bounded vesicle  Wnt signaling pathway  PDZ domain binding  negative regulation of Wnt signaling pathway  cytoplasmic vesicle  
Ontology : EGO-EBIDNA binding  cytoplasm  zygotic specification of dorsal/ventral axis  zinc ion binding  cytoplasmic membrane-bounded vesicle  Wnt signaling pathway  PDZ domain binding  negative regulation of Wnt signaling pathway  cytoplasmic vesicle  
Pathways : KEGGWnt signaling pathway   
Protein Interaction DatabaseCXXC4
DoCM (Curated mutations)CXXC4
Wikipedia pathwaysCXXC4
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerCXXC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXXC4
dbVarCXXC4
ClinVarCXXC4
1000_GenomesCXXC4 
Exome Variant ServerCXXC4
SNP (GeneSNP Utah)CXXC4
SNP : HGBaseCXXC4
Genetic variants : HAPMAPCXXC4
Genomic Variants (DGV)CXXC4 [DGVbeta]
Mutations
ICGC Data PortalCXXC4 
TCGA Data PortalCXXC4 
Tumor PortalCXXC4
Somatic Mutations in Cancer : COSMICCXXC4 
LOVD (Leiden Open Variation Database)genes/CXXC4
LOVD (Leiden Open Variation Database)genes/CXXC4
LOVD (Leiden Open Variation Database)genes/CXXC4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:105389463-105416058
CONAN: Copy Number AnalysisCXXC4 
Mutations and Diseases : HGMDCXXC4
OMIM611645   
MedgenCXXC4
NextProtQ9H2H0 [Medical]
GENETestsCXXC4
Disease Genetic AssociationCXXC4
Huge Navigator CXXC4 [HugePedia]  CXXC4 [HugeCancerGEM]
snp3D : Map Gene to Disease80319
DGIdb (Drug Gene Interaction db)CXXC4
BioCentury BCIQCXXC4
General knowledge
Homologs : HomoloGeneCXXC4
Homology/Alignments : Family Browser (UCSC)CXXC4
Phylogenetic Trees/Animal Genes : TreeFamCXXC4
Chemical/Protein Interactions : CTD80319
Chemical/Pharm GKB GenePA134992016
Clinical trialCXXC4
Cancer Resource (Charite)ENSG00000168772
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineCXXC4
GoPubMedCXXC4
iHOPCXXC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 29 18:22:56 CEST 2015

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