Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXXC4 (CXXC finger protein 4)

Identity

Other namesIDAX
HGNC (Hugo) CXXC4
LocusID (NCBI) 80319
Location 4q24
Location_base_pair Starts at 105389463 and ends at 105416058 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXXC4   24593
Cards
Entrez_Gene (NCBI)CXXC4  80319  CXXC finger protein 4
GeneCards (Weizmann)CXXC4
Ensembl (Hinxton)ENSG00000168772 [Gene_View]  chr4:105389463-105416058 [Contig_View]  CXXC4 [Vega]
ICGC DataPortalENSG00000168772
cBioPortalCXXC4
AceView (NCBI)CXXC4
Genatlas (Paris)CXXC4
WikiGenes80319
SOURCE (Princeton)NM_025212
Genomic and cartography
GoldenPath (UCSC)CXXC4  -  4q24   chr4:105389463-105416058 -  4q24   [Description]    (hg19-Feb_2009)
EnsemblCXXC4 - 4q24 [CytoView]
Mapping of homologs : NCBICXXC4 [Mapview]
OMIM611645   
Gene and transcription
Genbank (Entrez)AF272159 AK093871 AK125395 AK127778 BC119751
RefSeq transcript (Entrez)NM_025212
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838915 NW_004929320
Consensus coding sequences : CCDS (NCBI)CXXC4
Cluster EST : UnigeneHs.12248 [ NCBI ]
CGAP (NCI)Hs.12248
Alternative Splicing : Fast-db (Paris)GSHG0023452
Alternative Splicing GalleryENSG00000168772
Gene ExpressionCXXC4 [ NCBI-GEO ]     CXXC4 [ SEEK ]   CXXC4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2H0 (Uniprot)
NextProtQ9H2H0  [Medical]
With graphics : InterProQ9H2H0
Splice isoforms : SwissVarQ9H2H0 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZF_CXXC (PS51058)   
Domains : Interpro (EBI)Znf_CXXC [organisation]  
Related proteins : CluSTrQ9H2H0
Domain families : Pfam (Sanger)zf-CXXC (PF02008)   
Domain families : Pfam (NCBI)pfam02008   
DMDM Disease mutations80319
Blocks (Seattle)Q9H2H0
Human Protein AtlasENSG00000168772 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9H2H0
HPRD16773
IPIIPI00018828   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2H0
IntAct (EBI)Q9H2H0
FunCoupENSG00000168772
BioGRIDCXXC4
InParanoidQ9H2H0
Interologous Interaction database Q9H2H0
IntegromeDBCXXC4
STRING (EMBL)CXXC4
Ontologies - Pathways
Ontology : AmiGODNA binding  cytoplasm  zygotic specification of dorsal/ventral axis  zinc ion binding  Wnt signaling pathway  PDZ domain binding  negative regulation of Wnt signaling pathway  cytoplasmic vesicle  
Ontology : EGO-EBIDNA binding  cytoplasm  zygotic specification of dorsal/ventral axis  zinc ion binding  Wnt signaling pathway  PDZ domain binding  negative regulation of Wnt signaling pathway  cytoplasmic vesicle  
Pathways : KEGGWnt signaling pathway   
Protein Interaction DatabaseCXXC4
Wikipedia pathwaysCXXC4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CXXC4
snp3D : Map Gene to Disease80319
SNP (GeneSNP Utah)CXXC4
SNP : HGBaseCXXC4
Genetic variants : HAPMAPCXXC4
Exome VariantCXXC4
1000_GenomesCXXC4 
ICGC programENSG00000168772 
Somatic Mutations in Cancer : COSMICCXXC4 
CONAN: Copy Number AnalysisCXXC4 
Mutations and Diseases : HGMDCXXC4
Mutations and Diseases : intOGenCXXC4
Genomic VariantsCXXC4  CXXC4 [DGVbeta]
dbVarCXXC4
ClinVarCXXC4
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM611645   
MedgenCXXC4
GENETestsCXXC4
Disease Genetic AssociationCXXC4
Huge Navigator CXXC4 [HugePedia]  CXXC4 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCXXC4
Homology/Alignments : Family Browser (UCSC)CXXC4
Phylogenetic Trees/Animal Genes : TreeFamCXXC4
Chemical/Protein Interactions : CTD80319
Chemical/Pharm GKB GenePA134992016
Clinical trialCXXC4
Cancer Resource (Charite)ENSG00000168772
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
CoreMineCXXC4
iHOPCXXC4
OncoSearchCXXC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:43:46 CEST 2014

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