Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf21 (chromosome X open reading frame 21)

Identity

Alias_symbol (synonym)FLJ11577
Other alias-
HGNC (Hugo) CXorf21
LocusID (NCBI) 80231
Atlas_Id 62214
Location Xp21.2  [Link to chromosome band Xp21]
Location_base_pair Starts at 30558824 and ends at 30577916 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf21   25667
Cards
Entrez_Gene (NCBI)CXorf21  80231  chromosome X open reading frame 21
Aliases
GeneCards (Weizmann)CXorf21
Ensembl hg19 (Hinxton)ENSG00000120280 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120280 [Gene_View]  chrX:30558824-30577916 [Contig_View]  CXorf21 [Vega]
ICGC DataPortalENSG00000120280
TCGA cBioPortalCXorf21
AceView (NCBI)CXorf21
Genatlas (Paris)CXorf21
WikiGenes80231
SOURCE (Princeton)CXorf21
Genetics Home Reference (NIH)CXorf21
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf21  -     chrX:30558824-30577916 -  Xp21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf21  -     Xp21.2   [Description]    (hg19-Feb_2009)
EnsemblCXorf21 - Xp21.2 [CytoView hg19]  CXorf21 - Xp21.2 [CytoView hg38]
Mapping of homologs : NCBICXorf21 [Mapview hg19]  CXorf21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021639 BC020611 BX281759 DA921873 HQ447625
RefSeq transcript (Entrez)NM_025159
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf21
Cluster EST : UnigeneHs.665009 [ NCBI ]
CGAP (NCI)Hs.665009
Alternative Splicing GalleryENSG00000120280
Gene ExpressionCXorf21 [ NCBI-GEO ]   CXorf21 [ EBI - ARRAY_EXPRESS ]   CXorf21 [ SEEK ]   CXorf21 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80231
GTEX Portal (Tissue expression)CXorf21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAI6
Splice isoforms : SwissVarQ9HAI6
PhosPhoSitePlusQ9HAI6
Domains : Interpro (EBI)DUF4569   
Domain families : Pfam (Sanger)DUF4569 (PF15133)   
Domain families : Pfam (NCBI)pfam15133   
Conserved Domain (NCBI)CXorf21
DMDM Disease mutations80231
Blocks (Seattle)CXorf21
SuperfamilyQ9HAI6
Human Protein AtlasENSG00000120280
Peptide AtlasQ9HAI6
HPRD06518
IPIIPI00018654   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAI6
IntAct (EBI)Q9HAI6
FunCoupENSG00000120280
BioGRIDCXorf21
STRING (EMBL)CXorf21
ZODIACCXorf21
Ontologies - Pathways
QuickGOQ9HAI6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf21
Atlas of Cancer Signalling NetworkCXorf21
Wikipedia pathwaysCXorf21
Orthology - Evolution
OrthoDB80231
GeneTree (enSembl)ENSG00000120280
Phylogenetic Trees/Animal Genes : TreeFamCXorf21
HOVERGENQ9HAI6
HOGENOMQ9HAI6
Homologs : HomoloGeneCXorf21
Homology/Alignments : Family Browser (UCSC)CXorf21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf21
dbVarCXorf21
ClinVarCXorf21
1000_GenomesCXorf21 
Exome Variant ServerCXorf21
ExAC (Exome Aggregation Consortium)CXorf21 (select the gene name)
Genetic variants : HAPMAP80231
Genomic Variants (DGV)CXorf21 [DGVbeta]
DECIPHERCXorf21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf21 
Mutations
ICGC Data PortalCXorf21 
TCGA Data PortalCXorf21 
Broad Tumor PortalCXorf21
OASIS PortalCXorf21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf21
DgiDB (Drug Gene Interaction Database)CXorf21
DoCM (Curated mutations)CXorf21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf21 (select a term)
intoGenCXorf21
Cancer3DCXorf21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf21
Genetic Testing Registry CXorf21
NextProtQ9HAI6 [Medical]
TSGene80231
GENETestsCXorf21
Target ValidationCXorf21
Huge Navigator CXorf21 [HugePedia]
snp3D : Map Gene to Disease80231
BioCentury BCIQCXorf21
ClinGenCXorf21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80231
Chemical/Pharm GKB GenePA134932482
Clinical trialCXorf21
Miscellaneous
canSAR (ICR)CXorf21 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf21
EVEXCXorf21
GoPubMedCXorf21
iHOPCXorf21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:58 CEST 2017

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