Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf23 (chromosome X open reading frame 23)

Identity

Other alias-
HGNC (Hugo) CXorf23
LocusID (NCBI) 256643
Atlas_Id 62216
Location Xp22.12  [Link to chromosome band Xp22]
Location_base_pair Starts at 19912862 and ends at 19970264 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf23   27413
Cards
Entrez_Gene (NCBI)CXorf23  256643  chromosome X open reading frame 23
Aliases
GeneCards (Weizmann)CXorf23
Ensembl hg19 (Hinxton)ENSG00000173681 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173681 [Gene_View]  chrX:19912862-19970264 [Contig_View]  CXorf23 [Vega]
ICGC DataPortalENSG00000173681
TCGA cBioPortalCXorf23
AceView (NCBI)CXorf23
Genatlas (Paris)CXorf23
WikiGenes256643
SOURCE (Princeton)CXorf23
Genetics Home Reference (NIH)CXorf23
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf23  -     chrX:19912862-19970264 -  Xp22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf23  -     Xp22.12   [Description]    (hg19-Feb_2009)
EnsemblCXorf23 - Xp22.12 [CytoView hg19]  CXorf23 - Xp22.12 [CytoView hg38]
Mapping of homologs : NCBICXorf23 [Mapview hg19]  CXorf23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094661 AK127709 AL833278 BC046187 BC093092
RefSeq transcript (Entrez)NM_198279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf23
Cluster EST : UnigeneHs.661616 [ NCBI ]
CGAP (NCI)Hs.661616
Alternative Splicing GalleryENSG00000173681
Gene ExpressionCXorf23 [ NCBI-GEO ]   CXorf23 [ EBI - ARRAY_EXPRESS ]   CXorf23 [ SEEK ]   CXorf23 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256643
GTEX Portal (Tissue expression)CXorf23
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2AJT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2AJT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2AJT9
Splice isoforms : SwissVarA2AJT9
PhosPhoSitePlusA2AJT9
Domains : Interpro (EBI)THRAP3_BCLAF1   
Domain families : Pfam (Sanger)THRAP3_BCLAF1 (PF15440)   
Domain families : Pfam (NCBI)pfam15440   
Conserved Domain (NCBI)CXorf23
DMDM Disease mutations256643
Blocks (Seattle)CXorf23
SuperfamilyA2AJT9
Human Protein AtlasENSG00000173681
Peptide AtlasA2AJT9
HPRD06620
IPIIPI00746281   IPI00477909   IPI00166305   IPI00982960   
Protein Interaction databases
DIP (DOE-UCLA)A2AJT9
IntAct (EBI)A2AJT9
FunCoupENSG00000173681
BioGRIDCXorf23
STRING (EMBL)CXorf23
ZODIACCXorf23
Ontologies - Pathways
QuickGOA2AJT9
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkCXorf23
Atlas of Cancer Signalling NetworkCXorf23
Wikipedia pathwaysCXorf23
Orthology - Evolution
OrthoDB256643
GeneTree (enSembl)ENSG00000173681
Phylogenetic Trees/Animal Genes : TreeFamCXorf23
HOVERGENA2AJT9
HOGENOMA2AJT9
Homologs : HomoloGeneCXorf23
Homology/Alignments : Family Browser (UCSC)CXorf23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf23
dbVarCXorf23
ClinVarCXorf23
1000_GenomesCXorf23 
Exome Variant ServerCXorf23
ExAC (Exome Aggregation Consortium)CXorf23 (select the gene name)
Genetic variants : HAPMAP256643
Genomic Variants (DGV)CXorf23 [DGVbeta]
DECIPHERCXorf23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf23 
Mutations
ICGC Data PortalCXorf23 
TCGA Data PortalCXorf23 
Broad Tumor PortalCXorf23
OASIS PortalCXorf23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf23
DgiDB (Drug Gene Interaction Database)CXorf23
DoCM (Curated mutations)CXorf23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf23 (select a term)
intoGenCXorf23
Cancer3DCXorf23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf23
Genetic Testing Registry CXorf23
NextProtA2AJT9 [Medical]
TSGene256643
GENETestsCXorf23
Target ValidationCXorf23
Huge Navigator CXorf23 [HugePedia]
snp3D : Map Gene to Disease256643
BioCentury BCIQCXorf23
ClinGenCXorf23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256643
Chemical/Pharm GKB GenePA134885371
Clinical trialCXorf23
Miscellaneous
canSAR (ICR)CXorf23 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf23
EVEXCXorf23
GoPubMedCXorf23
iHOPCXorf23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:58 CEST 2017

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