Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf38 (chromosome X open reading frame 38)

Identity

Alias_symbol (synonym)MGC39350
Other alias-
HGNC (Hugo) CXorf38
LocusID (NCBI) 159013
Atlas_Id 62219
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 40626921 and ends at 40647683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CXorf38 (Xp11.4) / ACAA2 (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf38   28589
Cards
Entrez_Gene (NCBI)CXorf38  159013  chromosome X open reading frame 38
Aliases
GeneCards (Weizmann)CXorf38
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:40626921-40647683 [Contig_View]  CXorf38 [Vega]
TCGA cBioPortalCXorf38
AceView (NCBI)CXorf38
Genatlas (Paris)CXorf38
WikiGenes159013
SOURCE (Princeton)CXorf38
Genetics Home Reference (NIH)CXorf38
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf38  -     chrX:40626921-40647683 -  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf38  -     Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblCXorf38 - Xp11.4 [CytoView hg19]  CXorf38 - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBICXorf38 [Mapview hg19]  CXorf38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021629 AK095710 AK123989 AK304539 AK315384
RefSeq transcript (Entrez)NM_001330455 NM_144970
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf38
Cluster EST : UnigeneHs.495961 [ NCBI ]
CGAP (NCI)Hs.495961
Gene ExpressionCXorf38 [ NCBI-GEO ]   CXorf38 [ EBI - ARRAY_EXPRESS ]   CXorf38 [ SEEK ]   CXorf38 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159013
GTEX Portal (Tissue expression)CXorf38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB03
Splice isoforms : SwissVarQ8TB03
PhosPhoSitePlusQ8TB03
Domains : Interpro (EBI)DUF4559   
Domain families : Pfam (Sanger)DUF4559 (PF15112)   
Domain families : Pfam (NCBI)pfam15112   
Domain structure : Prodom (Prabi Lyon)PD661243 (PD661243)   
Conserved Domain (NCBI)CXorf38
DMDM Disease mutations159013
Blocks (Seattle)CXorf38
SuperfamilyQ8TB03
Peptide AtlasQ8TB03
HPRD06651
IPIIPI00152089   IPI00607830   IPI00552646   IPI00910523   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB03
IntAct (EBI)Q8TB03
BioGRIDCXorf38
STRING (EMBL)CXorf38
ZODIACCXorf38
Ontologies - Pathways
QuickGOQ8TB03
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf38
Atlas of Cancer Signalling NetworkCXorf38
Wikipedia pathwaysCXorf38
Orthology - Evolution
OrthoDB159013
Phylogenetic Trees/Animal Genes : TreeFamCXorf38
HOVERGENQ8TB03
HOGENOMQ8TB03
Homologs : HomoloGeneCXorf38
Homology/Alignments : Family Browser (UCSC)CXorf38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf38
dbVarCXorf38
ClinVarCXorf38
1000_GenomesCXorf38 
Exome Variant ServerCXorf38
ExAC (Exome Aggregation Consortium)CXorf38 (select the gene name)
Genetic variants : HAPMAP159013
Genomic Variants (DGV)CXorf38 [DGVbeta]
DECIPHERCXorf38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf38 
Mutations
ICGC Data PortalCXorf38 
TCGA Data PortalCXorf38 
Broad Tumor PortalCXorf38
OASIS PortalCXorf38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf38
DgiDB (Drug Gene Interaction Database)CXorf38
DoCM (Curated mutations)CXorf38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf38 (select a term)
intoGenCXorf38
Cancer3DCXorf38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf38
Genetic Testing Registry CXorf38
NextProtQ8TB03 [Medical]
TSGene159013
GENETestsCXorf38
Target ValidationCXorf38
Huge Navigator CXorf38 [HugePedia]
snp3D : Map Gene to Disease159013
BioCentury BCIQCXorf38
ClinGenCXorf38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159013
Chemical/Pharm GKB GenePA134955144
Clinical trialCXorf38
Miscellaneous
canSAR (ICR)CXorf38 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf38
EVEXCXorf38
GoPubMedCXorf38
iHOPCXorf38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:39 CEST 2017

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