Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CXorf40B (chromosome X open reading frame 40B)

Identity

Other alias-
HGNC (Hugo) CXorf40B
LocusID (NCBI) 541578
Atlas_Id 62221
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149932197 and ends at 149938498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IDS (Xq28) / CXorf40B (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf40B   17402
Cards
Entrez_Gene (NCBI)CXorf40B  541578  chromosome X open reading frame 40B
Aliases
GeneCards (Weizmann)CXorf40B
Ensembl hg19 (Hinxton)ENSG00000197021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197021 [Gene_View]  chrX:149932197-149938498 [Contig_View]  CXorf40B [Vega]
ICGC DataPortalENSG00000197021
TCGA cBioPortalCXorf40B
AceView (NCBI)CXorf40B
Genatlas (Paris)CXorf40B
WikiGenes541578
SOURCE (Princeton)CXorf40B
Genetics Home Reference (NIH)CXorf40B
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf40B  -     chrX:149932197-149938498 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf40B  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCXorf40B - Xq28 [CytoView hg19]  CXorf40B - Xq28 [CytoView hg38]
Mapping of homologs : NCBICXorf40B [Mapview hg19]  CXorf40B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009523 BM847839 L43575 L43578 U66042
RefSeq transcript (Entrez)NM_001013845
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf40B
Cluster EST : UnigeneHs.545950 [ NCBI ]
CGAP (NCI)Hs.545950
Alternative Splicing GalleryENSG00000197021
Gene ExpressionCXorf40B [ NCBI-GEO ]   CXorf40B [ EBI - ARRAY_EXPRESS ]   CXorf40B [ SEEK ]   CXorf40B [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf40B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)541578
GTEX Portal (Tissue expression)CXorf40B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DE9
Splice isoforms : SwissVarQ96DE9
PhosPhoSitePlusQ96DE9
Domains : Interpro (EBI)ASCH_domain    CXorf40    PUA-like_domain   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ASCH (SM01022)  
Conserved Domain (NCBI)CXorf40B
DMDM Disease mutations541578
Blocks (Seattle)CXorf40B
SuperfamilyQ96DE9
Human Protein AtlasENSG00000197021
Peptide AtlasQ96DE9
HPRD18676
IPIIPI00477224   IPI00970982   IPI00816818   
Protein Interaction databases
DIP (DOE-UCLA)Q96DE9
IntAct (EBI)Q96DE9
FunCoupENSG00000197021
BioGRIDCXorf40B
STRING (EMBL)CXorf40B
ZODIACCXorf40B
Ontologies - Pathways
QuickGOQ96DE9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf40B
Atlas of Cancer Signalling NetworkCXorf40B
Wikipedia pathwaysCXorf40B
Orthology - Evolution
OrthoDB541578
GeneTree (enSembl)ENSG00000197021
Phylogenetic Trees/Animal Genes : TreeFamCXorf40B
HOVERGENQ96DE9
HOGENOMQ96DE9
Homologs : HomoloGeneCXorf40B
Homology/Alignments : Family Browser (UCSC)CXorf40B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf40B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf40B
dbVarCXorf40B
ClinVarCXorf40B
1000_GenomesCXorf40B 
Exome Variant ServerCXorf40B
ExAC (Exome Aggregation Consortium)CXorf40B (select the gene name)
Genetic variants : HAPMAP541578
Genomic Variants (DGV)CXorf40B [DGVbeta]
DECIPHERCXorf40B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf40B 
Mutations
ICGC Data PortalCXorf40B 
TCGA Data PortalCXorf40B 
Broad Tumor PortalCXorf40B
OASIS PortalCXorf40B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf40B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf40B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CXorf40B
DgiDB (Drug Gene Interaction Database)CXorf40B
DoCM (Curated mutations)CXorf40B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf40B (select a term)
intoGenCXorf40B
Cancer3DCXorf40B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf40B
Genetic Testing Registry CXorf40B
NextProtQ96DE9 [Medical]
TSGene541578
GENETestsCXorf40B
Target ValidationCXorf40B
Huge Navigator CXorf40B [HugePedia]
snp3D : Map Gene to Disease541578
BioCentury BCIQCXorf40B
ClinGenCXorf40B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD541578
Chemical/Pharm GKB GenePA142672057
Clinical trialCXorf40B
Miscellaneous
canSAR (ICR)CXorf40B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf40B
EVEXCXorf40B
GoPubMedCXorf40B
iHOPCXorf40B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.