Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf49 (chromosome X open reading frame 49)

Identity

Other aliasCXorf49B
HGNC (Hugo) CXorf49
LocusID (NCBI) 100130361
Atlas_Id 62222
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71714374 and ends at 71718285 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf49   30891
Cards
Entrez_Gene (NCBI)CXorf49  100130361  chromosome X open reading frame 49
AliasesCXorf49B
GeneCards (Weizmann)CXorf49
Ensembl hg19 (Hinxton)ENSG00000215115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215115 [Gene_View]  chrX:71714374-71718285 [Contig_View]  CXorf49 [Vega]
ICGC DataPortalENSG00000215115
TCGA cBioPortalCXorf49
AceView (NCBI)CXorf49
Genatlas (Paris)CXorf49
WikiGenes100130361
SOURCE (Princeton)CXorf49
Genetics Home Reference (NIH)CXorf49
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf49  -     chrX:71714374-71718285 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf49  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblCXorf49 - Xq13.1 [CytoView hg19]  CXorf49 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBICXorf49 [Mapview hg19]  CXorf49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf49
Cluster EST : UnigeneHs.632817 [ NCBI ]
CGAP (NCI)Hs.632817
Alternative Splicing GalleryENSG00000215115
Gene ExpressionCXorf49 [ NCBI-GEO ]   CXorf49 [ EBI - ARRAY_EXPRESS ]   CXorf49 [ SEEK ]   CXorf49 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130361
GTEX Portal (Tissue expression)CXorf49
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYA2
Splice isoforms : SwissVarA8MYA2
PhosPhoSitePlusA8MYA2
Domains : Interpro (EBI)DUF4641   
Domain families : Pfam (Sanger)DUF4641 (PF15483)   
Domain families : Pfam (NCBI)pfam15483   
Conserved Domain (NCBI)CXorf49
DMDM Disease mutations100130361
Blocks (Seattle)CXorf49
SuperfamilyA8MYA2
Human Protein AtlasENSG00000215115
Peptide AtlasA8MYA2
IPIIPI00922495   
Protein Interaction databases
DIP (DOE-UCLA)A8MYA2
IntAct (EBI)A8MYA2
FunCoupENSG00000215115
BioGRIDCXorf49
STRING (EMBL)CXorf49
ZODIACCXorf49
Ontologies - Pathways
QuickGOA8MYA2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf49
Atlas of Cancer Signalling NetworkCXorf49
Wikipedia pathwaysCXorf49
Orthology - Evolution
OrthoDB100130361
GeneTree (enSembl)ENSG00000215115
Phylogenetic Trees/Animal Genes : TreeFamCXorf49
HOVERGENA8MYA2
HOGENOMA8MYA2
Homologs : HomoloGeneCXorf49
Homology/Alignments : Family Browser (UCSC)CXorf49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf49
dbVarCXorf49
ClinVarCXorf49
1000_GenomesCXorf49 
Exome Variant ServerCXorf49
ExAC (Exome Aggregation Consortium)CXorf49 (select the gene name)
Genetic variants : HAPMAP100130361
Genomic Variants (DGV)CXorf49 [DGVbeta]
DECIPHERCXorf49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf49 
Mutations
ICGC Data PortalCXorf49 
TCGA Data PortalCXorf49 
Broad Tumor PortalCXorf49
OASIS PortalCXorf49 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCXorf49
BioMutasearch CXorf49
DgiDB (Drug Gene Interaction Database)CXorf49
DoCM (Curated mutations)CXorf49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf49 (select a term)
intoGenCXorf49
Cancer3DCXorf49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf49
Genetic Testing Registry CXorf49
NextProtA8MYA2 [Medical]
TSGene100130361
GENETestsCXorf49
Target ValidationCXorf49
Huge Navigator CXorf49 [HugePedia]
snp3D : Map Gene to Disease100130361
BioCentury BCIQCXorf49
ClinGenCXorf49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130361
Chemical/Pharm GKB GenePA164718460
Clinical trialCXorf49
Miscellaneous
canSAR (ICR)CXorf49 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf49
EVEXCXorf49
GoPubMedCXorf49
iHOPCXorf49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:40 CEST 2017

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