Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf49B (chromosome X open reading frame 49B)

Identity

Other aliasCXorf49
HGNC (Hugo) CXorf49B
LocusID (NCBI) 100132994
Atlas_Id 62223
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71714374 and ends at 71718285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf49B   34229
Cards
Entrez_Gene (NCBI)CXorf49B  100132994  chromosome X open reading frame 49B
AliasesCXorf49
GeneCards (Weizmann)CXorf49B
Ensembl hg19 (Hinxton)ENSG00000215113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215113 [Gene_View]  chrX:71714374-71718285 [Contig_View]  CXorf49B [Vega]
ICGC DataPortalENSG00000215113
TCGA cBioPortalCXorf49B
AceView (NCBI)CXorf49B
Genatlas (Paris)CXorf49B
WikiGenes100132994
SOURCE (Princeton)CXorf49B
Genetics Home Reference (NIH)CXorf49B
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf49B  -     chrX:71714374-71718285 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf49B  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblCXorf49B - Xq13.1 [CytoView hg19]  CXorf49B - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBICXorf49B [Mapview hg19]  CXorf49B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145139
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf49B
Cluster EST : UnigeneHs.719592 [ NCBI ]
CGAP (NCI)Hs.719592
Alternative Splicing GalleryENSG00000215113
Gene ExpressionCXorf49B [ NCBI-GEO ]   CXorf49B [ EBI - ARRAY_EXPRESS ]   CXorf49B [ SEEK ]   CXorf49B [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf49B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132994
GTEX Portal (Tissue expression)CXorf49B
Human Protein AtlasENSG00000215113-CXorf49B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYA2
Splice isoforms : SwissVarA8MYA2
PhosPhoSitePlusA8MYA2
Domains : Interpro (EBI)DUF4641   
Domain families : Pfam (Sanger)DUF4641 (PF15483)   
Domain families : Pfam (NCBI)pfam15483   
Conserved Domain (NCBI)CXorf49B
DMDM Disease mutations100132994
Blocks (Seattle)CXorf49B
SuperfamilyA8MYA2
Human Protein Atlas [tissue]ENSG00000215113-CXorf49B [tissue]
Peptide AtlasA8MYA2
Protein Interaction databases
DIP (DOE-UCLA)A8MYA2
IntAct (EBI)A8MYA2
FunCoupENSG00000215113
BioGRIDCXorf49B
STRING (EMBL)CXorf49B
ZODIACCXorf49B
Ontologies - Pathways
QuickGOA8MYA2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf49B
Atlas of Cancer Signalling NetworkCXorf49B
Wikipedia pathwaysCXorf49B
Orthology - Evolution
OrthoDB100132994
GeneTree (enSembl)ENSG00000215113
Phylogenetic Trees/Animal Genes : TreeFamCXorf49B
HOVERGENA8MYA2
HOGENOMA8MYA2
Homologs : HomoloGeneCXorf49B
Homology/Alignments : Family Browser (UCSC)CXorf49B
Gene fusions - Rearrangements
Tumor Fusion PortalCXorf49B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf49B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf49B
dbVarCXorf49B
ClinVarCXorf49B
1000_GenomesCXorf49B 
Exome Variant ServerCXorf49B
ExAC (Exome Aggregation Consortium)ENSG00000215113
GNOMAD BrowserENSG00000215113
Genetic variants : HAPMAP100132994
Genomic Variants (DGV)CXorf49B [DGVbeta]
DECIPHERCXorf49B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf49B 
Mutations
ICGC Data PortalCXorf49B 
TCGA Data PortalCXorf49B 
Broad Tumor PortalCXorf49B
OASIS PortalCXorf49B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCXorf49B
BioMutasearch CXorf49B
DgiDB (Drug Gene Interaction Database)CXorf49B
DoCM (Curated mutations)CXorf49B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf49B (select a term)
intoGenCXorf49B
Cancer3DCXorf49B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCXorf49B
MedgenCXorf49B
Genetic Testing Registry CXorf49B
NextProtA8MYA2 [Medical]
TSGene100132994
GENETestsCXorf49B
Target ValidationCXorf49B
Huge Navigator CXorf49B [HugePedia]
snp3D : Map Gene to Disease100132994
BioCentury BCIQCXorf49B
ClinGenCXorf49B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132994
Chemical/Pharm GKB GenePA164718478
Clinical trialCXorf49B
Miscellaneous
canSAR (ICR)CXorf49B (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf49B
EVEXCXorf49B
GoPubMedCXorf49B
iHOPCXorf49B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:21 CET 2017

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