Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf56 (chromosome X open reading frame 56)

Identity

Alias_symbol (synonym)FLJ22965
Other alias-
HGNC (Hugo) CXorf56
LocusID (NCBI) 63932
Atlas_Id 54244
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 118672112 and ends at 118699372 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf56   26239
Cards
Entrez_Gene (NCBI)CXorf56  63932  chromosome X open reading frame 56
Aliases
GeneCards (Weizmann)CXorf56
Ensembl hg19 (Hinxton)ENSG00000018610 [Gene_View]  chrX:118672112-118699372 [Contig_View]  CXorf56 [Vega]
Ensembl hg38 (Hinxton)ENSG00000018610 [Gene_View]  chrX:118672112-118699372 [Contig_View]  CXorf56 [Vega]
ICGC DataPortalENSG00000018610
TCGA cBioPortalCXorf56
AceView (NCBI)CXorf56
Genatlas (Paris)CXorf56
WikiGenes63932
SOURCE (Princeton)CXorf56
Genetics Home Reference (NIH)CXorf56
Genomic and cartography
GoldenPath hg19 (UCSC)CXorf56  -     chrX:118672112-118699372 -  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CXorf56  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblCXorf56 - Xq24 [CytoView hg19]  CXorf56 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICXorf56 [Mapview hg19]  CXorf56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096297 AK298877 BC023506 BQ223940 DA590933
RefSeq transcript (Entrez)NM_001170569 NM_001170570 NM_022101
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016378 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)CXorf56
Cluster EST : UnigeneHs.248572 [ NCBI ]
CGAP (NCI)Hs.248572
Alternative Splicing GalleryENSG00000018610
Gene ExpressionCXorf56 [ NCBI-GEO ]   CXorf56 [ EBI - ARRAY_EXPRESS ]   CXorf56 [ SEEK ]   CXorf56 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63932
GTEX Portal (Tissue expression)CXorf56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5V9
Splice isoforms : SwissVarQ9H5V9
PhosPhoSitePlusQ9H5V9
Domains : Interpro (EBI)UPF0428   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXorf56
DMDM Disease mutations63932
Blocks (Seattle)CXorf56
SuperfamilyQ9H5V9
Human Protein AtlasENSG00000018610
Peptide AtlasQ9H5V9
HPRD06541
IPIIPI00005055   IPI00955024   IPI00954996   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5V9
IntAct (EBI)Q9H5V9
FunCoupENSG00000018610
BioGRIDCXorf56
STRING (EMBL)CXorf56
ZODIACCXorf56
Ontologies - Pathways
QuickGOQ9H5V9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf56
Atlas of Cancer Signalling NetworkCXorf56
Wikipedia pathwaysCXorf56
Orthology - Evolution
OrthoDB63932
GeneTree (enSembl)ENSG00000018610
Phylogenetic Trees/Animal Genes : TreeFamCXorf56
HOVERGENQ9H5V9
HOGENOMQ9H5V9
Homologs : HomoloGeneCXorf56
Homology/Alignments : Family Browser (UCSC)CXorf56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf56
dbVarCXorf56
ClinVarCXorf56
1000_GenomesCXorf56 
Exome Variant ServerCXorf56
ExAC (Exome Aggregation Consortium)CXorf56 (select the gene name)
Genetic variants : HAPMAP63932
Genomic Variants (DGV)CXorf56 [DGVbeta]
DECIPHER (Syndromes)X:118672112-118699372  ENSG00000018610
CONAN: Copy Number AnalysisCXorf56 
Mutations
ICGC Data PortalCXorf56 
TCGA Data PortalCXorf56 
Broad Tumor PortalCXorf56
OASIS PortalCXorf56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf56
DgiDB (Drug Gene Interaction Database)CXorf56
DoCM (Curated mutations)CXorf56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf56 (select a term)
intoGenCXorf56
Cancer3DCXorf56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf56
Genetic Testing Registry CXorf56
NextProtQ9H5V9 [Medical]
TSGene63932
GENETestsCXorf56
Huge Navigator CXorf56 [HugePedia]
snp3D : Map Gene to Disease63932
BioCentury BCIQCXorf56
ClinGenCXorf56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63932
Chemical/Pharm GKB GenePA143485444
Clinical trialCXorf56
Miscellaneous
canSAR (ICR)CXorf56 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf56
EVEXCXorf56
GoPubMedCXorf56
iHOPCXorf56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:58:08 CEST 2017

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