Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf57 (chromosome X open reading frame 57)

Identity

Alias_symbol (synonym)FLJ14191
FLJ10178
Other alias-
HGNC (Hugo) CXorf57
LocusID (NCBI) 55086
Atlas_Id 62226
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 105855160 and ends at 105922673 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf57   25486
Cards
Entrez_Gene (NCBI)CXorf57  55086  chromosome X open reading frame 57
Aliases
GeneCards (Weizmann)CXorf57
Ensembl hg19 (Hinxton)ENSG00000147231 [Gene_View]  chrX:105855160-105922673 [Contig_View]  CXorf57 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147231 [Gene_View]  chrX:105855160-105922673 [Contig_View]  CXorf57 [Vega]
ICGC DataPortalENSG00000147231
TCGA cBioPortalCXorf57
AceView (NCBI)CXorf57
Genatlas (Paris)CXorf57
WikiGenes55086
SOURCE (Princeton)CXorf57
Genetics Home Reference (NIH)CXorf57
Genomic and cartography
GoldenPath hg19 (UCSC)CXorf57  -     chrX:105855160-105922673 +  Xq22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CXorf57  -     Xq22.3   [Description]    (hg38-Dec_2013)
EnsemblCXorf57 - Xq22.3 [CytoView hg19]  CXorf57 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBICXorf57 [Mapview hg19]  CXorf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001040 AK024253 AK291730 BC011483 BC033709
RefSeq transcript (Entrez)NM_001184782 NM_018015
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021317 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)CXorf57
Cluster EST : UnigeneHs.274267 [ NCBI ]
CGAP (NCI)Hs.274267
Alternative Splicing GalleryENSG00000147231
Gene ExpressionCXorf57 [ NCBI-GEO ]   CXorf57 [ EBI - ARRAY_EXPRESS ]   CXorf57 [ SEEK ]   CXorf57 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55086
GTEX Portal (Tissue expression)CXorf57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSI4
Splice isoforms : SwissVarQ6NSI4
PhosPhoSitePlusQ6NSI4
Domains : Interpro (EBI)NA-bd_OB-fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXorf57
DMDM Disease mutations55086
Blocks (Seattle)CXorf57
SuperfamilyQ6NSI4
Human Protein AtlasENSG00000147231
Peptide AtlasQ6NSI4
HPRD06513
IPIIPI00301517   IPI00640891   IPI00477042   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSI4
IntAct (EBI)Q6NSI4
FunCoupENSG00000147231
BioGRIDCXorf57
STRING (EMBL)CXorf57
ZODIACCXorf57
Ontologies - Pathways
QuickGOQ6NSI4
Ontology : AmiGOprotein binding  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  poly(A) RNA binding  
NDEx NetworkCXorf57
Atlas of Cancer Signalling NetworkCXorf57
Wikipedia pathwaysCXorf57
Orthology - Evolution
OrthoDB55086
GeneTree (enSembl)ENSG00000147231
Phylogenetic Trees/Animal Genes : TreeFamCXorf57
HOVERGENQ6NSI4
HOGENOMQ6NSI4
Homologs : HomoloGeneCXorf57
Homology/Alignments : Family Browser (UCSC)CXorf57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf57
dbVarCXorf57
ClinVarCXorf57
1000_GenomesCXorf57 
Exome Variant ServerCXorf57
ExAC (Exome Aggregation Consortium)CXorf57 (select the gene name)
Genetic variants : HAPMAP55086
Genomic Variants (DGV)CXorf57 [DGVbeta]
DECIPHER (Syndromes)X:105855160-105922673  ENSG00000147231
CONAN: Copy Number AnalysisCXorf57 
Mutations
ICGC Data PortalCXorf57 
TCGA Data PortalCXorf57 
Broad Tumor PortalCXorf57
OASIS PortalCXorf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf57
DgiDB (Drug Gene Interaction Database)CXorf57
DoCM (Curated mutations)CXorf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf57 (select a term)
intoGenCXorf57
Cancer3DCXorf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf57
Genetic Testing Registry CXorf57
NextProtQ6NSI4 [Medical]
TSGene55086
GENETestsCXorf57
Huge Navigator CXorf57 [HugePedia]
snp3D : Map Gene to Disease55086
BioCentury BCIQCXorf57
ClinGenCXorf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55086
Chemical/Pharm GKB GenePA145149058
Clinical trialCXorf57
Miscellaneous
canSAR (ICR)CXorf57 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf57
EVEXCXorf57
GoPubMedCXorf57
iHOPCXorf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:47 CET 2017

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