Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf58 (chromosome X open reading frame 58)

Identity

Alias_symbol (synonym)FLJ25444
Other alias-
HGNC (Hugo) CXorf58
LocusID (NCBI) 254158
Atlas_Id 62227
Location Xp22.11  [Link to chromosome band Xp22]
Location_base_pair Starts at 23908006 and ends at 23939507 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
POLA1 (Xp22.11) / CXorf58 (Xp22.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf58   26356
Cards
Entrez_Gene (NCBI)CXorf58  254158  chromosome X open reading frame 58
Aliases
GeneCards (Weizmann)CXorf58
Ensembl hg19 (Hinxton)ENSG00000165182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165182 [Gene_View]  chrX:23908006-23939507 [Contig_View]  CXorf58 [Vega]
ICGC DataPortalENSG00000165182
TCGA cBioPortalCXorf58
AceView (NCBI)CXorf58
Genatlas (Paris)CXorf58
WikiGenes254158
SOURCE (Princeton)CXorf58
Genetics Home Reference (NIH)CXorf58
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf58  -     chrX:23908006-23939507 +  Xp22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf58  -     Xp22.11   [Description]    (hg19-Feb_2009)
EnsemblCXorf58 - Xp22.11 [CytoView hg19]  CXorf58 - Xp22.11 [CytoView hg38]
Mapping of homologs : NCBICXorf58 [Mapview hg19]  CXorf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058173 BC117344 BC117346 BC144007 HQ258380
RefSeq transcript (Entrez)NM_001169574 NM_152761
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf58
Cluster EST : UnigeneHs.351265 [ NCBI ]
CGAP (NCI)Hs.351265
Alternative Splicing GalleryENSG00000165182
Gene ExpressionCXorf58 [ NCBI-GEO ]   CXorf58 [ EBI - ARRAY_EXPRESS ]   CXorf58 [ SEEK ]   CXorf58 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254158
GTEX Portal (Tissue expression)CXorf58
Human Protein AtlasENSG00000165182-CXorf58 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LI9
Splice isoforms : SwissVarQ96LI9
PhosPhoSitePlusQ96LI9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXorf58
DMDM Disease mutations254158
Blocks (Seattle)CXorf58
SuperfamilyQ96LI9
Human Protein Atlas [tissue]ENSG00000165182-CXorf58 [tissue]
Peptide AtlasQ96LI9
HPRD06544
IPIIPI00065057   IPI00954981   IPI00640327   
Protein Interaction databases
DIP (DOE-UCLA)Q96LI9
IntAct (EBI)Q96LI9
FunCoupENSG00000165182
BioGRIDCXorf58
STRING (EMBL)CXorf58
ZODIACCXorf58
Ontologies - Pathways
QuickGOQ96LI9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf58
Atlas of Cancer Signalling NetworkCXorf58
Wikipedia pathwaysCXorf58
Orthology - Evolution
OrthoDB254158
GeneTree (enSembl)ENSG00000165182
Phylogenetic Trees/Animal Genes : TreeFamCXorf58
HOVERGENQ96LI9
HOGENOMQ96LI9
Homologs : HomoloGeneCXorf58
Homology/Alignments : Family Browser (UCSC)CXorf58
Gene fusions - Rearrangements
Tumor Fusion PortalCXorf58
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf58
dbVarCXorf58
ClinVarCXorf58
1000_GenomesCXorf58 
Exome Variant ServerCXorf58
ExAC (Exome Aggregation Consortium)ENSG00000165182
GNOMAD BrowserENSG00000165182
Genetic variants : HAPMAP254158
Genomic Variants (DGV)CXorf58 [DGVbeta]
DECIPHERCXorf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf58 
Mutations
ICGC Data PortalCXorf58 
TCGA Data PortalCXorf58 
Broad Tumor PortalCXorf58
OASIS PortalCXorf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf58
DgiDB (Drug Gene Interaction Database)CXorf58
DoCM (Curated mutations)CXorf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf58 (select a term)
intoGenCXorf58
Cancer3DCXorf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCXorf58
MedgenCXorf58
Genetic Testing Registry CXorf58
NextProtQ96LI9 [Medical]
TSGene254158
GENETestsCXorf58
Target ValidationCXorf58
Huge Navigator CXorf58 [HugePedia]
snp3D : Map Gene to Disease254158
BioCentury BCIQCXorf58
ClinGenCXorf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254158
Chemical/Pharm GKB GenePA145149060
Clinical trialCXorf58
Miscellaneous
canSAR (ICR)CXorf58 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf58
EVEXCXorf58
GoPubMedCXorf58
iHOPCXorf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:22 CET 2017

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