Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf66 (chromosome X open reading frame 66)

Identity

Alias (NCBI)SGPX
HGNC (Hugo) CXorf66
HGNC Alias symbRP11-35F15.2
SGPX
HGNC Alias namesecreted glycoprotein, X-linked
LocusID (NCBI) 347487
Atlas_Id 55020
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 139955729 and ends at 139965521 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD99L2 (Xq28)::CXorf66 (Xq27.1)MFSD6 (2q32.2)::CXorf66 (Xq27.1)CD99L2 Xq28::CXorf66 Xq27.1
MFSD6 2q32.2::CXorf66 Xq27.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CXorf66   33743
Cards
Entrez_Gene (NCBI)CXorf66    chromosome X open reading frame 66
AliasesSGPX
GeneCards (Weizmann)CXorf66
Ensembl hg19 (Hinxton)ENSG00000203933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203933 [Gene_View]  ENSG00000203933 [Sequence]  chrX:139955729-139965521 [Contig_View]  CXorf66 [Vega]
ICGC DataPortalENSG00000203933
TCGA cBioPortalCXorf66
AceView (NCBI)CXorf66
Genatlas (Paris)CXorf66
SOURCE (Princeton)CXorf66
Genetics Home Reference (NIH)CXorf66
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf66  -     chrX:139955729-139965521 -  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf66  -     Xq27.1   [Description]    (hg19-Feb_2009)
GoldenPathCXorf66 - Xq27.1 [CytoView hg19]  CXorf66 - Xq27.1 [CytoView hg38]
ImmunoBaseENSG00000203933
Genome Data Viewer NCBICXorf66 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA758774 BC137148 BC137149
RefSeq transcript (Entrez)NM_001013403
Consensus coding sequences : CCDS (NCBI)CXorf66
Gene ExpressionCXorf66 [ NCBI-GEO ]   CXorf66 [ EBI - ARRAY_EXPRESS ]   CXorf66 [ SEEK ]   CXorf66 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf66 [ Firebrowse - Broad ]
GenevisibleExpression of CXorf66 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347487
GTEX Portal (Tissue expression)CXorf66
Human Protein AtlasENSG00000203933-CXorf66 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JRM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JRM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JRM2
PhosPhoSitePlusQ5JRM2
Domains : Interpro (EBI)CXorf66   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXorf66
SuperfamilyQ5JRM2
AlphaFold pdb e-kbQ5JRM2   
Human Protein Atlas [tissue]ENSG00000203933-CXorf66 [tissue]
HPRD18139
Protein Interaction databases
DIP (DOE-UCLA)Q5JRM2
IntAct (EBI)Q5JRM2
BioGRIDCXorf66
STRING (EMBL)CXorf66
ZODIACCXorf66
Ontologies - Pathways
QuickGOQ5JRM2
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkCXorf66
Atlas of Cancer Signalling NetworkCXorf66
Wikipedia pathwaysCXorf66
Orthology - Evolution
OrthoDB347487
GeneTree (enSembl)ENSG00000203933
Phylogenetic Trees/Animal Genes : TreeFamCXorf66
Homologs : HomoloGeneCXorf66
Homology/Alignments : Family Browser (UCSC)CXorf66
Gene fusions - Rearrangements
Fusion : MitelmanCD99L2::CXorf66 [Xq28/Xq27.1]  
Fusion : MitelmanMFSD6::CXorf66 [2q32.2/Xq27.1]  
Fusion : QuiverCXorf66
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf66
dbVarCXorf66
ClinVarCXorf66
MonarchCXorf66
1000_GenomesCXorf66 
Exome Variant ServerCXorf66
GNOMAD BrowserENSG00000203933
Varsome BrowserCXorf66
ACMGCXorf66 variants
VarityQ5JRM2
Genomic Variants (DGV)CXorf66 [DGVbeta]
DECIPHERCXorf66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf66 
Mutations
ICGC Data PortalCXorf66 
TCGA Data PortalCXorf66 
Broad Tumor PortalCXorf66
OASIS PortalCXorf66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf66  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCXorf66
Mutations and Diseases : HGMDCXorf66
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCXorf66
DgiDB (Drug Gene Interaction Database)CXorf66
DoCM (Curated mutations)CXorf66
CIViC (Clinical Interpretations of Variants in Cancer)CXorf66
Cancer3DCXorf66
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCXorf66
MedgenCXorf66
Genetic Testing Registry CXorf66
NextProtQ5JRM2 [Medical]
GENETestsCXorf66
Target ValidationCXorf66
Huge Navigator CXorf66 [HugePedia]
ClinGenCXorf66
Clinical trials, drugs, therapy
MyCancerGenomeCXorf66
Protein Interactions : CTDCXorf66
Pharm GKB GenePA164718516
PharosQ5JRM2
Clinical trialCXorf66
Miscellaneous
canSAR (ICR)CXorf66
HarmonizomeCXorf66
ARCHS4CXorf66
DataMed IndexCXorf66
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCXorf66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 17 15:20:56 CET 2022

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