Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf66 (chromosome X open reading frame 66)

Identity

Alias_namesX-linked
Alias_symbol (synonym)RP11-35F15.2
SGPX
Other alias
HGNC (Hugo) CXorf66
LocusID (NCBI) 347487
Atlas_Id 55020
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 139955725 and ends at 139965518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD99L2 (Xq28) / CXorf66 (Xq27.1)MFSD6 (2q32.2) / CXorf66 (Xq27.1)CD99L2 Xq28 / CXorf66 Xq27.1
MFSD6 2q32.2 / CXorf66 Xq27.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf66   33743
Cards
Entrez_Gene (NCBI)CXorf66  347487  chromosome X open reading frame 66
AliasesSGPX
GeneCards (Weizmann)CXorf66
Ensembl hg19 (Hinxton)ENSG00000203933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203933 [Gene_View]  chrX:139955725-139965518 [Contig_View]  CXorf66 [Vega]
ICGC DataPortalENSG00000203933
TCGA cBioPortalCXorf66
AceView (NCBI)CXorf66
Genatlas (Paris)CXorf66
WikiGenes347487
SOURCE (Princeton)CXorf66
Genetics Home Reference (NIH)CXorf66
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf66  -     chrX:139955725-139965518 -  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf66  -     Xq27.1   [Description]    (hg19-Feb_2009)
EnsemblCXorf66 - Xq27.1 [CytoView hg19]  CXorf66 - Xq27.1 [CytoView hg38]
Mapping of homologs : NCBICXorf66 [Mapview hg19]  CXorf66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA758774 BC137148 BC137149
RefSeq transcript (Entrez)NM_001013403
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf66
Cluster EST : UnigeneHs.121384 [ NCBI ]
CGAP (NCI)Hs.121384
Alternative Splicing GalleryENSG00000203933
Gene ExpressionCXorf66 [ NCBI-GEO ]   CXorf66 [ EBI - ARRAY_EXPRESS ]   CXorf66 [ SEEK ]   CXorf66 [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347487
GTEX Portal (Tissue expression)CXorf66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JRM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JRM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JRM2
Splice isoforms : SwissVarQ5JRM2
PhosPhoSitePlusQ5JRM2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXorf66
DMDM Disease mutations347487
Blocks (Seattle)CXorf66
SuperfamilyQ5JRM2
Human Protein AtlasENSG00000203933
Peptide AtlasQ5JRM2
HPRD18139
IPIIPI00254976   
Protein Interaction databases
DIP (DOE-UCLA)Q5JRM2
IntAct (EBI)Q5JRM2
FunCoupENSG00000203933
BioGRIDCXorf66
STRING (EMBL)CXorf66
ZODIACCXorf66
Ontologies - Pathways
QuickGOQ5JRM2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCXorf66
Atlas of Cancer Signalling NetworkCXorf66
Wikipedia pathwaysCXorf66
Orthology - Evolution
OrthoDB347487
GeneTree (enSembl)ENSG00000203933
Phylogenetic Trees/Animal Genes : TreeFamCXorf66
HOVERGENQ5JRM2
HOGENOMQ5JRM2
Homologs : HomoloGeneCXorf66
Homology/Alignments : Family Browser (UCSC)CXorf66
Gene fusions - Rearrangements
Fusion : MitelmanCD99L2/CXorf66 [Xq28/Xq27.1]  [t(X;X)(q27;q28)]  
Fusion : MitelmanMFSD6/CXorf66 [2q32.2/Xq27.1]  [t(X;2)(q27;q32)]  
Fusion: TCGACD99L2 Xq28 CXorf66 Xq27.1 BRCA
Fusion: TCGAMFSD6 2q32.2 CXorf66 Xq27.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf66
dbVarCXorf66
ClinVarCXorf66
1000_GenomesCXorf66 
Exome Variant ServerCXorf66
ExAC (Exome Aggregation Consortium)CXorf66 (select the gene name)
Genetic variants : HAPMAP347487
Genomic Variants (DGV)CXorf66 [DGVbeta]
DECIPHERCXorf66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf66 
Mutations
ICGC Data PortalCXorf66 
TCGA Data PortalCXorf66 
Broad Tumor PortalCXorf66
OASIS PortalCXorf66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCXorf66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CXorf66
DgiDB (Drug Gene Interaction Database)CXorf66
DoCM (Curated mutations)CXorf66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf66 (select a term)
intoGenCXorf66
Cancer3DCXorf66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCXorf66
Genetic Testing Registry CXorf66
NextProtQ5JRM2 [Medical]
TSGene347487
GENETestsCXorf66
Target ValidationCXorf66
Huge Navigator CXorf66 [HugePedia]
snp3D : Map Gene to Disease347487
BioCentury BCIQCXorf66
ClinGenCXorf66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347487
Chemical/Pharm GKB GenePA164718516
Clinical trialCXorf66
Miscellaneous
canSAR (ICR)CXorf66 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf66
EVEXCXorf66
GoPubMedCXorf66
iHOPCXorf66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:30:15 CEST 2017

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