Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYB561A3 (cytochrome b561 family member A3)

Identity

Alias (NCBI)CYBASC3
LCYTB
HGNC (Hugo) CYB561A3
HGNC Previous nameCYBASC3
HGNC Previous namecytochrome b, ascorbate dependent 3
 cytochrome b561 family, member A3
LocusID (NCBI) 220002
Atlas_Id 62233
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61348748 and ends at 61362283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CYB561A3 (11q12.2) / LRRC58 (3q13.33)YWHAG (7q11.23) / CYB561A3 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CYB561A3   23014
Cards
Entrez_Gene (NCBI)CYB561A3    cytochrome b561 family member A3
AliasesCYBASC3; LCYTB
GeneCards (Weizmann)CYB561A3
Ensembl hg19 (Hinxton)ENSG00000162144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162144 [Gene_View]  ENSG00000162144 [Sequence]  chr11:61348748-61362283 [Contig_View]  CYB561A3 [Vega]
ICGC DataPortalENSG00000162144
TCGA cBioPortalCYB561A3
AceView (NCBI)CYB561A3
Genatlas (Paris)CYB561A3
SOURCE (Princeton)CYB561A3
Genetics Home Reference (NIH)CYB561A3
Genomic and cartography
GoldenPath hg38 (UCSC)CYB561A3  -     chr11:61348748-61362283 -  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYB561A3  -     11q12.2   [Description]    (hg19-Feb_2009)
GoldenPathCYB561A3 - 11q12.2 [CytoView hg19]  CYB561A3 - 11q12.2 [CytoView hg38]
ImmunoBaseENSG00000162144
genome Data Viewer NCBICYB561A3 [Mapview hg19]  
OMIM618757   
Gene and transcription
Genbank (Entrez)AA085565 AI813810 AK024953 AK025870 AK056751
RefSeq transcript (Entrez)NM_001161452 NM_001161454 NM_001300763 NM_153611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYB561A3
Alternative Splicing GalleryENSG00000162144
Gene ExpressionCYB561A3 [ NCBI-GEO ]   CYB561A3 [ EBI - ARRAY_EXPRESS ]   CYB561A3 [ SEEK ]   CYB561A3 [ MEM ]
Gene Expression Viewer (FireBrowse)CYB561A3 [ Firebrowse - Broad ]
GenevisibleExpression of CYB561A3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220002
GTEX Portal (Tissue expression)CYB561A3
Human Protein AtlasENSG00000162144-CYB561A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBI2
Splice isoforms : SwissVarQ8NBI2
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8NBI2
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cyt_b561/ferric_Rdtase_TM   
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
Conserved Domain (NCBI)CYB561A3
Blocks (Seattle)CYB561A3
SuperfamilyQ8NBI2
Human Protein Atlas [tissue]ENSG00000162144-CYB561A3 [tissue]
Peptide AtlasQ8NBI2
HPRD11316
IPIIPI00419497   IPI00910811   IPI00937910   IPI00979466   IPI01009710   IPI01015570   IPI01016005   IPI01015263   IPI01013754   IPI01014217   IPI01012953   IPI01021711   IPI01013208   IPI01011925   IPI01012394   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBI2
IntAct (EBI)Q8NBI2
BioGRIDCYB561A3
STRING (EMBL)CYB561A3
ZODIACCYB561A3
Ontologies - Pathways
QuickGOQ8NBI2
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  lysosomal membrane  lysosomal membrane  lysosomal membrane  cytosol  integral component of membrane  oxidoreductase activity  late endosome membrane  intracellular membrane-bounded organelle  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  lysosomal membrane  lysosomal membrane  lysosomal membrane  cytosol  integral component of membrane  oxidoreductase activity  late endosome membrane  intracellular membrane-bounded organelle  metal ion binding  oxidation-reduction process  
NDEx NetworkCYB561A3
Atlas of Cancer Signalling NetworkCYB561A3
Wikipedia pathwaysCYB561A3
Orthology - Evolution
OrthoDB220002
GeneTree (enSembl)ENSG00000162144
Phylogenetic Trees/Animal Genes : TreeFamCYB561A3
HOGENOMQ8NBI2
Homologs : HomoloGeneCYB561A3
Homology/Alignments : Family Browser (UCSC)CYB561A3
Gene fusions - Rearrangements
Fusion : QuiverCYB561A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYB561A3 [hg38]
dbVarCYB561A3
ClinVarCYB561A3
MonarchCYB561A3
1000_GenomesCYB561A3 
Exome Variant ServerCYB561A3
GNOMAD BrowserENSG00000162144
Varsome BrowserCYB561A3
Genomic Variants (DGV)CYB561A3 [DGVbeta]
DECIPHERCYB561A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYB561A3 
Mutations
ICGC Data PortalCYB561A3 
TCGA Data PortalCYB561A3 
Broad Tumor PortalCYB561A3
OASIS PortalCYB561A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYB561A3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCYB561A3
Mutations and Diseases : HGMDCYB561A3
BioMutasearch CYB561A3
DgiDB (Drug Gene Interaction Database)CYB561A3
DoCM (Curated mutations)CYB561A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYB561A3 (select a term)
intoGenCYB561A3
Cancer3DCYB561A3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618757   
Orphanet
DisGeNETCYB561A3
MedgenCYB561A3
Genetic Testing Registry CYB561A3
NextProtQ8NBI2 [Medical]
GENETestsCYB561A3
Target ValidationCYB561A3
Huge Navigator CYB561A3 [HugePedia]
ClinGenCYB561A3
Clinical trials, drugs, therapy
MyCancerGenomeCYB561A3
Protein Interactions : CTD
Pharm GKB GenePA134880796
Clinical trialCYB561A3
Miscellaneous
canSAR (ICR)CYB561A3 (select the gene name)
HarmonizomeCYB561A3
DataMed IndexCYB561A3
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYB561A3
EVEXCYB561A3
GoPubMedCYB561A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:51:07 CET 2020

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