Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYB561D1 (cytochrome b561 family member D1)

Identity

Alias (NCBI)-
HGNC (Hugo) CYB561D1
HGNC Alias symbFLJ39035
FLJ44753
HGNC Previous namecytochrome b-561 domain containing 1
 cytochrome b561 family, member D1
LocusID (NCBI) 284613
Atlas_Id 62234
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109494079 and ends at 109500441 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTK (Xq22.1) / CYB561D1 (1p13.3)CYB561D1 (1p13.3) / CYB561D1 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CYB561D1   26804
Cards
Entrez_Gene (NCBI)CYB561D1    cytochrome b561 family member D1
Aliases
GeneCards (Weizmann)CYB561D1
Ensembl hg19 (Hinxton)ENSG00000174151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174151 [Gene_View]  ENSG00000174151 [Sequence]  chr1:109494079-109500441 [Contig_View]  CYB561D1 [Vega]
ICGC DataPortalENSG00000174151
TCGA cBioPortalCYB561D1
AceView (NCBI)CYB561D1
Genatlas (Paris)CYB561D1
SOURCE (Princeton)CYB561D1
Genetics Home Reference (NIH)CYB561D1
Genomic and cartography
GoldenPath hg38 (UCSC)CYB561D1  -     chr1:109494079-109500441 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYB561D1  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathCYB561D1 - 1p13.3 [CytoView hg19]  CYB561D1 - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000174151
genome Data Viewer NCBICYB561D1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI375149 AK092717 AK096354 AK126707 AK128798
RefSeq transcript (Entrez)NM_001134400 NM_001134402 NM_001134403 NM_001134404 NM_182580
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYB561D1
Alternative Splicing GalleryENSG00000174151
Gene ExpressionCYB561D1 [ NCBI-GEO ]   CYB561D1 [ EBI - ARRAY_EXPRESS ]   CYB561D1 [ SEEK ]   CYB561D1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYB561D1 [ Firebrowse - Broad ]
GenevisibleExpression of CYB561D1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284613
GTEX Portal (Tissue expression)CYB561D1
Human Protein AtlasENSG00000174151-CYB561D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8Q1
Splice isoforms : SwissVarQ8N8Q1
PhosPhoSitePlusQ8N8Q1
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cyt_b561/ferric_Rdtase_TM   
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
Conserved Domain (NCBI)CYB561D1
Blocks (Seattle)CYB561D1
SuperfamilyQ8N8Q1
Human Protein Atlas [tissue]ENSG00000174151-CYB561D1 [tissue]
Peptide AtlasQ8N8Q1
HPRD09902
IPIIPI00167530   IPI00515012   IPI00909405   IPI00443475   IPI00514848   IPI00978214   IPI00977585   IPI00976134   IPI00976707   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8Q1
IntAct (EBI)Q8N8Q1
BioGRIDCYB561D1
STRING (EMBL)CYB561D1
ZODIACCYB561D1
Ontologies - Pathways
QuickGOQ8N8Q1
Ontology : AmiGOintegral component of membrane  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIintegral component of membrane  metal ion binding  oxidation-reduction process  
NDEx NetworkCYB561D1
Atlas of Cancer Signalling NetworkCYB561D1
Wikipedia pathwaysCYB561D1
Orthology - Evolution
OrthoDB284613
GeneTree (enSembl)ENSG00000174151
Phylogenetic Trees/Animal Genes : TreeFamCYB561D1
HOGENOMQ8N8Q1
Homologs : HomoloGeneCYB561D1
Homology/Alignments : Family Browser (UCSC)CYB561D1
Gene fusions - Rearrangements
Fusion : QuiverCYB561D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYB561D1 [hg38]
dbVarCYB561D1
ClinVarCYB561D1
MonarchCYB561D1
1000_GenomesCYB561D1 
Exome Variant ServerCYB561D1
GNOMAD BrowserENSG00000174151
Varsome BrowserCYB561D1
Genomic Variants (DGV)CYB561D1 [DGVbeta]
DECIPHERCYB561D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYB561D1 
Mutations
ICGC Data PortalCYB561D1 
TCGA Data PortalCYB561D1 
Broad Tumor PortalCYB561D1
OASIS PortalCYB561D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYB561D1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCYB561D1
Mutations and Diseases : HGMDCYB561D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYB561D1
DgiDB (Drug Gene Interaction Database)CYB561D1
DoCM (Curated mutations)CYB561D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYB561D1 (select a term)
intoGenCYB561D1
Cancer3DCYB561D1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCYB561D1
MedgenCYB561D1
Genetic Testing Registry CYB561D1
NextProtQ8N8Q1 [Medical]
GENETestsCYB561D1
Target ValidationCYB561D1
Huge Navigator CYB561D1 [HugePedia]
ClinGenCYB561D1
Clinical trials, drugs, therapy
MyCancerGenomeCYB561D1
Protein Interactions : CTD
Pharm GKB GenePA134872038
Clinical trialCYB561D1
Miscellaneous
canSAR (ICR)CYB561D1 (select the gene name)
HarmonizomeCYB561D1
DataMed IndexCYB561D1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYB561D1
EVEXCYB561D1
GoPubMedCYB561D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:51:07 CET 2020

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