Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYB561D2 (cytochrome b561 family member D2)

Identity

Alias_namescytochrome b-561 domain containing 2
cytochrome b561 family, member D2
Alias_symbol (synonym)101F6
TSP10
Other aliasXXcos-LUCA11.4
HGNC (Hugo) CYB561D2
LocusID (NCBI) 11068
Atlas_Id 40229
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 50350695 and ends at 50354065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CYB561D2 (3p21.31) / CYB561D2 (3p21.31)CYB561D2 (3p21.31) / HNRNPAB (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYB561D2   30253
Cards
Entrez_Gene (NCBI)CYB561D2  11068  cytochrome b561 family member D2
Aliases101F6; TSP10; XXcos-LUCA11.4
GeneCards (Weizmann)CYB561D2
Ensembl hg19 (Hinxton)ENSG00000114395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114395 [Gene_View]  chr3:50350695-50354065 [Contig_View]  CYB561D2 [Vega]
ICGC DataPortalENSG00000114395
TCGA cBioPortalCYB561D2
AceView (NCBI)CYB561D2
Genatlas (Paris)CYB561D2
WikiGenes11068
SOURCE (Princeton)CYB561D2
Genetics Home Reference (NIH)CYB561D2
Genomic and cartography
GoldenPath hg38 (UCSC)CYB561D2  -     chr3:50350695-50354065 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYB561D2  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblCYB561D2 - 3p21.31 [CytoView hg19]  CYB561D2 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICYB561D2 [Mapview hg19]  CYB561D2 [Mapview hg38]
OMIM607068   
Gene and transcription
Genbank (Entrez)AF040704 AK291167 BC047691 BM704874 BM852873
RefSeq transcript (Entrez)NM_001291284 NM_007022
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYB561D2
Cluster EST : UnigeneHs.669905 [ NCBI ]
CGAP (NCI)Hs.669905
Alternative Splicing GalleryENSG00000114395
Gene ExpressionCYB561D2 [ NCBI-GEO ]   CYB561D2 [ EBI - ARRAY_EXPRESS ]   CYB561D2 [ SEEK ]   CYB561D2 [ MEM ]
Gene Expression Viewer (FireBrowse)CYB561D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11068
GTEX Portal (Tissue expression)CYB561D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14569   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14569  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14569
Splice isoforms : SwissVarO14569
PhosPhoSitePlusO14569
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cyt_b561/ferric_Rdtase_TM   
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
Conserved Domain (NCBI)CYB561D2
DMDM Disease mutations11068
Blocks (Seattle)CYB561D2
SuperfamilyO14569
Human Protein AtlasENSG00000114395
Peptide AtlasO14569
HPRD06143
IPIIPI00013026   
Protein Interaction databases
DIP (DOE-UCLA)O14569
IntAct (EBI)O14569
FunCoupENSG00000114395
BioGRIDCYB561D2
STRING (EMBL)CYB561D2
ZODIACCYB561D2
Ontologies - Pathways
QuickGOO14569
Ontology : AmiGOintegral component of membrane  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIintegral component of membrane  metal ion binding  oxidation-reduction process  
NDEx NetworkCYB561D2
Atlas of Cancer Signalling NetworkCYB561D2
Wikipedia pathwaysCYB561D2
Orthology - Evolution
OrthoDB11068
GeneTree (enSembl)ENSG00000114395
Phylogenetic Trees/Animal Genes : TreeFamCYB561D2
HOVERGENO14569
HOGENOMO14569
Homologs : HomoloGeneCYB561D2
Homology/Alignments : Family Browser (UCSC)CYB561D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYB561D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYB561D2
dbVarCYB561D2
ClinVarCYB561D2
1000_GenomesCYB561D2 
Exome Variant ServerCYB561D2
ExAC (Exome Aggregation Consortium)CYB561D2 (select the gene name)
Genetic variants : HAPMAP11068
Genomic Variants (DGV)CYB561D2 [DGVbeta]
DECIPHERCYB561D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYB561D2 
Mutations
ICGC Data PortalCYB561D2 
TCGA Data PortalCYB561D2 
Broad Tumor PortalCYB561D2
OASIS PortalCYB561D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYB561D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYB561D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYB561D2
DgiDB (Drug Gene Interaction Database)CYB561D2
DoCM (Curated mutations)CYB561D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYB561D2 (select a term)
intoGenCYB561D2
Cancer3DCYB561D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607068   
Orphanet
MedgenCYB561D2
Genetic Testing Registry CYB561D2
NextProtO14569 [Medical]
TSGene11068
GENETestsCYB561D2
Huge Navigator CYB561D2 [HugePedia]
snp3D : Map Gene to Disease11068
BioCentury BCIQCYB561D2
ClinGenCYB561D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11068
Chemical/Pharm GKB GenePA134977950
Clinical trialCYB561D2
Miscellaneous
canSAR (ICR)CYB561D2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYB561D2
EVEXCYB561D2
GoPubMedCYB561D2
iHOPCYB561D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:12:25 CEST 2017

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