Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CYB5D1 (cytochrome b5 domain containing 1)

Identity

Alias_symbol (synonym)FLJ32499
Other alias-
HGNC (Hugo) CYB5D1
LocusID (NCBI) 124637
Atlas_Id 62235
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7857727 and ends at 7862282 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CYB5D1 (17p13.1) / ZXDC (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYB5D1   26516
Cards
Entrez_Gene (NCBI)CYB5D1  124637  cytochrome b5 domain containing 1
Aliases
GeneCards (Weizmann)CYB5D1
Ensembl hg19 (Hinxton)ENSG00000182224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182224 [Gene_View]  chr17:7857727-7862282 [Contig_View]  CYB5D1 [Vega]
ICGC DataPortalENSG00000182224
TCGA cBioPortalCYB5D1
AceView (NCBI)CYB5D1
Genatlas (Paris)CYB5D1
WikiGenes124637
SOURCE (Princeton)CYB5D1
Genetics Home Reference (NIH)CYB5D1
Genomic and cartography
GoldenPath hg38 (UCSC)CYB5D1  -     chr17:7857727-7862282 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYB5D1  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblCYB5D1 - 17p13.1 [CytoView hg19]  CYB5D1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBICYB5D1 [Mapview hg19]  CYB5D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022811 AK057061 AK125598 AK289520 BC060779
RefSeq transcript (Entrez)NM_001330110 NM_144607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYB5D1
Cluster EST : UnigeneHs.27475 [ NCBI ]
CGAP (NCI)Hs.27475
Alternative Splicing GalleryENSG00000182224
Gene ExpressionCYB5D1 [ NCBI-GEO ]   CYB5D1 [ EBI - ARRAY_EXPRESS ]   CYB5D1 [ SEEK ]   CYB5D1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYB5D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124637
GTEX Portal (Tissue expression)CYB5D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9G0
Splice isoforms : SwissVarQ6P9G0
PhosPhoSitePlusQ6P9G0
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B5_2 (PS50255)   
Domains : Interpro (EBI)Cyt_B5-like_heme/steroid-bd   
Domain families : Pfam (Sanger)Cyt-b5 (PF00173)   
Domain families : Pfam (NCBI)pfam00173   
Domain families : Smart (EMBL)Cyt-b5 (SM01117)  
Conserved Domain (NCBI)CYB5D1
DMDM Disease mutations124637
Blocks (Seattle)CYB5D1
SuperfamilyQ6P9G0
Human Protein AtlasENSG00000182224
Peptide AtlasQ6P9G0
HPRD13408
IPIIPI00060991   IPI00478747   IPI01018700   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9G0
IntAct (EBI)Q6P9G0
FunCoupENSG00000182224
BioGRIDCYB5D1
STRING (EMBL)CYB5D1
ZODIACCYB5D1
Ontologies - Pathways
QuickGOQ6P9G0
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkCYB5D1
Atlas of Cancer Signalling NetworkCYB5D1
Wikipedia pathwaysCYB5D1
Orthology - Evolution
OrthoDB124637
GeneTree (enSembl)ENSG00000182224
Phylogenetic Trees/Animal Genes : TreeFamCYB5D1
HOVERGENQ6P9G0
HOGENOMQ6P9G0
Homologs : HomoloGeneCYB5D1
Homology/Alignments : Family Browser (UCSC)CYB5D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYB5D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYB5D1
dbVarCYB5D1
ClinVarCYB5D1
1000_GenomesCYB5D1 
Exome Variant ServerCYB5D1
ExAC (Exome Aggregation Consortium)CYB5D1 (select the gene name)
Genetic variants : HAPMAP124637
Genomic Variants (DGV)CYB5D1 [DGVbeta]
DECIPHERCYB5D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYB5D1 
Mutations
ICGC Data PortalCYB5D1 
TCGA Data PortalCYB5D1 
Broad Tumor PortalCYB5D1
OASIS PortalCYB5D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYB5D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYB5D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYB5D1
DgiDB (Drug Gene Interaction Database)CYB5D1
DoCM (Curated mutations)CYB5D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYB5D1 (select a term)
intoGenCYB5D1
Cancer3DCYB5D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCYB5D1
Genetic Testing Registry CYB5D1
NextProtQ6P9G0 [Medical]
TSGene124637
GENETestsCYB5D1
Target ValidationCYB5D1
Huge Navigator CYB5D1 [HugePedia]
snp3D : Map Gene to Disease124637
BioCentury BCIQCYB5D1
ClinGenCYB5D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124637
Chemical/Pharm GKB GenePA142672058
Clinical trialCYB5D1
Miscellaneous
canSAR (ICR)CYB5D1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYB5D1
EVEXCYB5D1
GoPubMedCYB5D1
iHOPCYB5D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:45:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.