Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYBA (cytochrome b-245, alpha polypeptide)

Identity

Other namesp22-PHOX
HGNC (Hugo) CYBA
LocusID (NCBI) 1535
Location 16q24.3
Location_base_pair Starts at 88709697 and ends at 88717492 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYBA   2577
Cards
Entrez_Gene (NCBI)CYBA  1535  cytochrome b-245, alpha polypeptide
GeneCards (Weizmann)CYBA
Ensembl (Hinxton)ENSG00000051523 [Gene_View]  chr16:88709697-88717492 [Contig_View]  CYBA [Vega]
ICGC DataPortalENSG00000051523
AceView (NCBI)CYBA
Genatlas (Paris)CYBA
WikiGenes1535
SOURCE (Princeton)NM_000101
Genomic and cartography
GoldenPath (UCSC)CYBA  -  16q24.3   chr16:88709697-88717492 -  16q24.3   [Description]    (hg19-Feb_2009)
EnsemblCYBA - 16q24.3 [CytoView]
Mapping of homologs : NCBICYBA [Mapview]
OMIM233690   608508   
Gene and transcription
Genbank (Entrez)AK097127 AK125578 AK300049 AK309030 BC006465
RefSeq transcript (Entrez)NM_000101
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_007291 NT_010498 NW_001838333 NW_004929403
Consensus coding sequences : CCDS (NCBI)CYBA
Cluster EST : UnigeneHs.513803 [ NCBI ]
CGAP (NCI)Hs.513803
Alternative Splicing : Fast-db (Paris)GSHG0012066
Alternative Splicing GalleryENSG00000051523
Gene ExpressionCYBA [ NCBI-GEO ]     CYBA [ SEEK ]   CYBA [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13498 (Uniprot)
NextProtP13498  [Medical]
With graphics : InterProP13498
Splice isoforms : SwissVarP13498 (Swissvar)
Domains : Interpro (EBI)Cyt_b558_asu   
Related proteins : CluSTrP13498
Domain families : Pfam (Sanger)Cytochrom_B558a (PF05038)   
Domain families : Pfam (NCBI)pfam05038   
DMDM Disease mutations1535
Blocks (Seattle)P13498
PDB (SRS)1WLP   
PDB (PDBSum)1WLP   
PDB (IMB)1WLP   
PDB (RSDB)1WLP   
Human Protein AtlasENSG00000051523
Peptide AtlasP13498
HPRD01989
IPIIPI00218433   
Protein Interaction databases
DIP (DOE-UCLA)P13498
IntAct (EBI)P13498
FunCoupENSG00000051523
BioGRIDCYBA
InParanoidP13498
Interologous Interaction database P13498
IntegromeDBCYBA
STRING (EMBL)CYBA
Ontologies - Pathways
Ontology : AmiGOpositive regulation of endothelial cell proliferation  antigen processing and presentation of peptide antigen via MHC class I  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  negative regulation of glomerular filtration by angiotensin  protein binding  mitochondrion  Golgi apparatus  superoxide metabolic process  inflammatory response  electron carrier activity  electron carrier activity  smooth muscle hypertrophy  membrane  superoxide-generating NADPH oxidase activity  apical plasma membrane  cytochrome complex assembly  SH3 domain binding  heme binding  secretory granule  positive regulation of cell growth  dendrite  phagocytic vesicle membrane  response to nutrient levels  response to drug  superoxide anion generation  antigen processing and presentation of exogenous peptide antigen via MHC class I  NADPH oxidase complex  NADPH oxidase complex  neuronal cell body  innate immune response  respiratory burst  metal ion binding  protein heterodimerization activity  hydrogen peroxide biosynthetic process  interaction with host  oxidation-reduction process  response to interleukin-1  cellular response to amino acid stimulus  cellular response to mechanical stimulus  cellular response to glucose stimulus  cellular response to tumor necrosis factor  cellular response to organic cyclic compound  cellular response to gamma radiation  phagosome maturation  
Ontology : EGO-EBIpositive regulation of endothelial cell proliferation  antigen processing and presentation of peptide antigen via MHC class I  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  negative regulation of glomerular filtration by angiotensin  protein binding  mitochondrion  Golgi apparatus  superoxide metabolic process  inflammatory response  electron carrier activity  electron carrier activity  smooth muscle hypertrophy  membrane  superoxide-generating NADPH oxidase activity  apical plasma membrane  cytochrome complex assembly  SH3 domain binding  heme binding  secretory granule  positive regulation of cell growth  dendrite  phagocytic vesicle membrane  response to nutrient levels  response to drug  superoxide anion generation  antigen processing and presentation of exogenous peptide antigen via MHC class I  NADPH oxidase complex  NADPH oxidase complex  neuronal cell body  innate immune response  respiratory burst  metal ion binding  protein heterodimerization activity  hydrogen peroxide biosynthetic process  interaction with host  oxidation-reduction process  response to interleukin-1  cellular response to amino acid stimulus  cellular response to mechanical stimulus  cellular response to glucose stimulus  cellular response to tumor necrosis factor  cellular response to organic cyclic compound  cellular response to gamma radiation  phagosome maturation  
Pathways : KEGGPhagosome    Osteoclast differentiation    Leukocyte transendothelial migration    Leishmaniasis   
Protein Interaction DatabaseCYBA
Wikipedia pathwaysCYBA
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CYBA
SNP (GeneSNP Utah)CYBA
SNP : HGBaseCYBA
Genetic variants : HAPMAPCYBA
1000_GenomesCYBA 
ICGC programENSG00000051523 
CONAN: Copy Number AnalysisCYBA 
Somatic Mutations in Cancer : COSMICCYBA 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Mutations and Diseases : HGMDCYBA
OMIM233690    608508   
MedgenCYBA
GENETestsCYBA
Disease Genetic AssociationCYBA
Huge Navigator CYBA [HugePedia]  CYBA [HugeCancerGEM]
Genomic VariantsCYBA  CYBA [DGVbeta]
Exome VariantCYBA
dbVarCYBA
ClinVarCYBA
snp3D : Map Gene to Disease1535
General knowledge
Homologs : HomoloGeneCYBA
Homology/Alignments : Family Browser (UCSC)CYBA
Phylogenetic Trees/Animal Genes : TreeFamCYBA
Chemical/Protein Interactions : CTD1535
Chemical/Pharm GKB GenePA27075
Clinical trialCYBA
Cancer Resource (Charite)ENSG00000051523
Other databases
Probes
Litterature
PubMed250 Pubmed reference(s) in Entrez
CoreMineCYBA
iHOPCYBA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:41:21 CEST 2014

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