Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYBRD1 (cytochrome b reductase 1)

Identity

Alias_symbol (synonym)DCYTB
FLJ23462
FRRS3
CYB561A2
Other alias
HGNC (Hugo) CYBRD1
LocusID (NCBI) 79901
Atlas_Id 62239
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 171522356 and ends at 171558133 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CYBRD1 (2q31.1) / CYBRD1 (2q31.1)PLXND1 (3q22.1) / CYBRD1 (2q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYBRD1   20797
Cards
Entrez_Gene (NCBI)CYBRD1  79901  cytochrome b reductase 1
AliasesCYB561A2; DCYTB; FRRS3
GeneCards (Weizmann)CYBRD1
Ensembl hg19 (Hinxton)ENSG00000071967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071967 [Gene_View]  chr2:171522356-171558133 [Contig_View]  CYBRD1 [Vega]
ICGC DataPortalENSG00000071967
TCGA cBioPortalCYBRD1
AceView (NCBI)CYBRD1
Genatlas (Paris)CYBRD1
WikiGenes79901
SOURCE (Princeton)CYBRD1
Genetics Home Reference (NIH)CYBRD1
Genomic and cartography
GoldenPath hg38 (UCSC)CYBRD1  -     chr2:171522356-171558133 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYBRD1  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblCYBRD1 - 2q31.1 [CytoView hg19]  CYBRD1 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBICYBRD1 [Mapview hg19]  CYBRD1 [Mapview hg38]
OMIM605745   
Gene and transcription
Genbank (Entrez)AK026654 AK027115 AK128495 AK225459 AK291731
RefSeq transcript (Entrez)NM_001127383 NM_001256909 NM_024843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYBRD1
Cluster EST : UnigeneHs.221941 [ NCBI ]
CGAP (NCI)Hs.221941
Alternative Splicing GalleryENSG00000071967
Gene ExpressionCYBRD1 [ NCBI-GEO ]   CYBRD1 [ EBI - ARRAY_EXPRESS ]   CYBRD1 [ SEEK ]   CYBRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYBRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79901
GTEX Portal (Tissue expression)CYBRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53TN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53TN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53TN4
Splice isoforms : SwissVarQ53TN4
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   
PhosPhoSitePlusQ53TN4
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cybrd1    Cyt_b561/ferric_Rdtase_TM   
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
Conserved Domain (NCBI)CYBRD1
DMDM Disease mutations79901
Blocks (Seattle)CYBRD1
SuperfamilyQ53TN4
Human Protein AtlasENSG00000071967
Peptide AtlasQ53TN4
HPRD05764
IPIIPI00100199   IPI00917921   IPI00443565   IPI00916645   
Protein Interaction databases
DIP (DOE-UCLA)Q53TN4
IntAct (EBI)Q53TN4
FunCoupENSG00000071967
BioGRIDCYBRD1
STRING (EMBL)CYBRD1
ZODIACCYBRD1
Ontologies - Pathways
QuickGOQ53TN4
Ontology : AmiGOferric-chelate reductase activity  protein binding  lysosomal membrane  plasma membrane  cellular iron ion homeostasis  response to iron ion  integral component of membrane  oxidoreductase activity, oxidizing metal ions  brush border membrane  metal ion binding  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIferric-chelate reductase activity  protein binding  lysosomal membrane  plasma membrane  cellular iron ion homeostasis  response to iron ion  integral component of membrane  oxidoreductase activity, oxidizing metal ions  brush border membrane  metal ion binding  oxidation-reduction process  extracellular exosome  
Pathways : KEGGMineral absorption   
NDEx NetworkCYBRD1
Atlas of Cancer Signalling NetworkCYBRD1
Wikipedia pathwaysCYBRD1
Orthology - Evolution
OrthoDB79901
GeneTree (enSembl)ENSG00000071967
Phylogenetic Trees/Animal Genes : TreeFamCYBRD1
HOVERGENQ53TN4
HOGENOMQ53TN4
Homologs : HomoloGeneCYBRD1
Homology/Alignments : Family Browser (UCSC)CYBRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYBRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYBRD1
dbVarCYBRD1
ClinVarCYBRD1
1000_GenomesCYBRD1 
Exome Variant ServerCYBRD1
ExAC (Exome Aggregation Consortium)CYBRD1 (select the gene name)
Genetic variants : HAPMAP79901
Genomic Variants (DGV)CYBRD1 [DGVbeta]
DECIPHERCYBRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYBRD1 
Mutations
ICGC Data PortalCYBRD1 
TCGA Data PortalCYBRD1 
Broad Tumor PortalCYBRD1
OASIS PortalCYBRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYBRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYBRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYBRD1
DgiDB (Drug Gene Interaction Database)CYBRD1
DoCM (Curated mutations)CYBRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYBRD1 (select a term)
intoGenCYBRD1
Cancer3DCYBRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605745   
Orphanet
MedgenCYBRD1
Genetic Testing Registry CYBRD1
NextProtQ53TN4 [Medical]
TSGene79901
GENETestsCYBRD1
Target ValidationCYBRD1
Huge Navigator CYBRD1 [HugePedia]
snp3D : Map Gene to Disease79901
BioCentury BCIQCYBRD1
ClinGenCYBRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79901
Chemical/Pharm GKB GenePA134970061
Clinical trialCYBRD1
Miscellaneous
canSAR (ICR)CYBRD1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYBRD1
EVEXCYBRD1
GoPubMedCYBRD1
iHOPCYBRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:03 CEST 2017

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