Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYHR1 (cysteine and histidine rich 1)

Identity

Alias_namescysteine/histidine-rich 1
Alias_symbol (synonym)CHRP
KIAA0496
MGC13010
Other alias
HGNC (Hugo) CYHR1
LocusID (NCBI) 50626
Atlas_Id 62241
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144463819 and ends at 144465648 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BOP1 (8q24.3) / CYHR1 (8q24.3)CYHR1 (8q24.3) / ACTN1 (14q24.1)CYHR1 (8q24.3) / CYHR1 (8q24.3)
LTBP3 (11q13.1) / CYHR1 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYHR1   17806
Cards
Entrez_Gene (NCBI)CYHR1  50626  cysteine and histidine rich 1
AliasesCHRP
GeneCards (Weizmann)CYHR1
Ensembl hg19 (Hinxton)ENSG00000187954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187954 [Gene_View]  chr8:144463819-144465648 [Contig_View]  CYHR1 [Vega]
ICGC DataPortalENSG00000187954
TCGA cBioPortalCYHR1
AceView (NCBI)CYHR1
Genatlas (Paris)CYHR1
WikiGenes50626
SOURCE (Princeton)CYHR1
Genetics Home Reference (NIH)CYHR1
Genomic and cartography
GoldenPath hg38 (UCSC)CYHR1  -     chr8:144463819-144465648 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYHR1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblCYHR1 - 8q24.3 [CytoView hg19]  CYHR1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBICYHR1 [Mapview hg19]  CYHR1 [Mapview hg38]
OMIM616635   
Gene and transcription
Genbank (Entrez)AB007965 AK094514 AK160381 BC004544 BC005073
RefSeq transcript (Entrez)NM_001129888 NM_001330618 NM_032687 NM_138496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYHR1
Cluster EST : UnigeneHs.459379 [ NCBI ]
CGAP (NCI)Hs.459379
Alternative Splicing GalleryENSG00000187954
Gene ExpressionCYHR1 [ NCBI-GEO ]   CYHR1 [ EBI - ARRAY_EXPRESS ]   CYHR1 [ SEEK ]   CYHR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYHR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50626
GTEX Portal (Tissue expression)CYHR1
Human Protein AtlasENSG00000187954-CYHR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMK1
Splice isoforms : SwissVarQ6ZMK1
PhosPhoSitePlusQ6ZMK1
Domaine pattern : Prosite (Expaxy)ZF_TRAF (PS50145)   
Domains : Interpro (EBI)SIAH-type    TRAF-like    Znf_RING/FYVE/PHD    Znf_TRAF   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CYHR1
DMDM Disease mutations50626
Blocks (Seattle)CYHR1
SuperfamilyQ6ZMK1
Human Protein Atlas [tissue]ENSG00000187954-CYHR1 [tissue]
Peptide AtlasQ6ZMK1
HPRD13107
IPIIPI00889783   IPI00889572   IPI00013419   IPI00790692   IPI01011177   IPI00977573   IPI00984502   IPI00976773   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMK1
IntAct (EBI)Q6ZMK1
FunCoupENSG00000187954
BioGRIDCYHR1
STRING (EMBL)CYHR1
ZODIACCYHR1
Ontologies - Pathways
QuickGOQ6ZMK1
Ontology : AmiGOprotein binding  nucleoplasm  zinc ion binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein binding  nucleoplasm  zinc ion binding  perinuclear region of cytoplasm  
NDEx NetworkCYHR1
Atlas of Cancer Signalling NetworkCYHR1
Wikipedia pathwaysCYHR1
Orthology - Evolution
OrthoDB50626
GeneTree (enSembl)ENSG00000187954
Phylogenetic Trees/Animal Genes : TreeFamCYHR1
HOVERGENQ6ZMK1
HOGENOMQ6ZMK1
Homologs : HomoloGeneCYHR1
Homology/Alignments : Family Browser (UCSC)CYHR1
Gene fusions - Rearrangements
Fusion: Tumor Portal CYHR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYHR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYHR1
dbVarCYHR1
ClinVarCYHR1
1000_GenomesCYHR1 
Exome Variant ServerCYHR1
ExAC (Exome Aggregation Consortium)ENSG00000187954
GNOMAD BrowserENSG00000187954
Genetic variants : HAPMAP50626
Genomic Variants (DGV)CYHR1 [DGVbeta]
DECIPHERCYHR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYHR1 
Mutations
ICGC Data PortalCYHR1 
TCGA Data PortalCYHR1 
Broad Tumor PortalCYHR1
OASIS PortalCYHR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYHR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYHR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYHR1
DgiDB (Drug Gene Interaction Database)CYHR1
DoCM (Curated mutations)CYHR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYHR1 (select a term)
intoGenCYHR1
Cancer3DCYHR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616635   
Orphanet
MedgenCYHR1
Genetic Testing Registry CYHR1
NextProtQ6ZMK1 [Medical]
TSGene50626
GENETestsCYHR1
Target ValidationCYHR1
Huge Navigator CYHR1 [HugePedia]
snp3D : Map Gene to Disease50626
BioCentury BCIQCYHR1
ClinGenCYHR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50626
Chemical/Pharm GKB GenePA27081
Clinical trialCYHR1
Miscellaneous
canSAR (ICR)CYHR1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYHR1
EVEXCYHR1
GoPubMedCYHR1
iHOPCYHR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:43:50 CET 2017

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