Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYLC1 (cylicin 1)

Identity

Alias_namescylicin, basic protein of sperm head cytoskeleton 1
Other aliasCYCL1
HGNC (Hugo) CYLC1
LocusID (NCBI) 1538
Atlas_Id 62242
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 83861126 and ends at 83886700 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYLC1   2582
Cards
Entrez_Gene (NCBI)CYLC1  1538  cylicin 1
AliasesCYCL1
GeneCards (Weizmann)CYLC1
Ensembl hg19 (Hinxton)ENSG00000183035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183035 [Gene_View]  chrX:83861126-83886700 [Contig_View]  CYLC1 [Vega]
ICGC DataPortalENSG00000183035
TCGA cBioPortalCYLC1
AceView (NCBI)CYLC1
Genatlas (Paris)CYLC1
WikiGenes1538
SOURCE (Princeton)CYLC1
Genetics Home Reference (NIH)CYLC1
Genomic and cartography
GoldenPath hg38 (UCSC)CYLC1  -     chrX:83861126-83886700 +  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYLC1  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblCYLC1 - Xq21.1 [CytoView hg19]  CYLC1 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBICYLC1 [Mapview hg19]  CYLC1 [Mapview hg38]
OMIM300768   
Gene and transcription
Genbank (Entrez)BC021669 BC038787 BC058019 BC070355 BC126461
RefSeq transcript (Entrez)NM_001271680 NM_021118
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYLC1
Cluster EST : UnigeneHs.444230 [ NCBI ]
CGAP (NCI)Hs.444230
Alternative Splicing GalleryENSG00000183035
Gene ExpressionCYLC1 [ NCBI-GEO ]   CYLC1 [ EBI - ARRAY_EXPRESS ]   CYLC1 [ SEEK ]   CYLC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYLC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1538
GTEX Portal (Tissue expression)CYLC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35663   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35663  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35663
Splice isoforms : SwissVarP35663
PhosPhoSitePlusP35663
Domains : Interpro (EBI)CYLC    Cylicin_N   
Domain families : Pfam (Sanger)Cylicin_N (PF15241)   
Domain families : Pfam (NCBI)pfam15241   
Conserved Domain (NCBI)CYLC1
DMDM Disease mutations1538
Blocks (Seattle)CYLC1
SuperfamilyP35663
Human Protein AtlasENSG00000183035
Peptide AtlasP35663
IPIIPI00020039   IPI01012081   
Protein Interaction databases
DIP (DOE-UCLA)P35663
IntAct (EBI)P35663
FunCoupENSG00000183035
BioGRIDCYLC1
STRING (EMBL)CYLC1
ZODIACCYLC1
Ontologies - Pathways
QuickGOP35663
Ontology : AmiGOstructural molecule activity  structural constituent of cytoskeleton  nucleus  cytoskeleton organization  multicellular organism development  spermatogenesis  cell differentiation  cytoskeletal calyx  acrosomal matrix  
Ontology : EGO-EBIstructural molecule activity  structural constituent of cytoskeleton  nucleus  cytoskeleton organization  multicellular organism development  spermatogenesis  cell differentiation  cytoskeletal calyx  acrosomal matrix  
NDEx NetworkCYLC1
Atlas of Cancer Signalling NetworkCYLC1
Wikipedia pathwaysCYLC1
Orthology - Evolution
OrthoDB1538
GeneTree (enSembl)ENSG00000183035
Phylogenetic Trees/Animal Genes : TreeFamCYLC1
HOVERGENP35663
HOGENOMP35663
Homologs : HomoloGeneCYLC1
Homology/Alignments : Family Browser (UCSC)CYLC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYLC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYLC1
dbVarCYLC1
ClinVarCYLC1
1000_GenomesCYLC1 
Exome Variant ServerCYLC1
ExAC (Exome Aggregation Consortium)CYLC1 (select the gene name)
Genetic variants : HAPMAP1538
Genomic Variants (DGV)CYLC1 [DGVbeta]
DECIPHERCYLC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYLC1 
Mutations
ICGC Data PortalCYLC1 
TCGA Data PortalCYLC1 
Broad Tumor PortalCYLC1
OASIS PortalCYLC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYLC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYLC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYLC1
DgiDB (Drug Gene Interaction Database)CYLC1
DoCM (Curated mutations)CYLC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYLC1 (select a term)
intoGenCYLC1
Cancer3DCYLC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300768   
Orphanet
MedgenCYLC1
Genetic Testing Registry CYLC1
NextProtP35663 [Medical]
TSGene1538
GENETestsCYLC1
Target ValidationCYLC1
Huge Navigator CYLC1 [HugePedia]
snp3D : Map Gene to Disease1538
BioCentury BCIQCYLC1
ClinGenCYLC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1538
Chemical/Pharm GKB GenePA27082
Clinical trialCYLC1
Miscellaneous
canSAR (ICR)CYLC1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYLC1
EVEXCYLC1
GoPubMedCYLC1
iHOPCYLC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:45:04 CEST 2017

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