Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYLC2 (cylicin 2)

Identity

Alias_namescylicin, basic protein of sperm head cytoskeleton 2
Other alias-
HGNC (Hugo) CYLC2
LocusID (NCBI) 1539
Atlas_Id 62243
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 102995311 and ends at 103018488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / CYLC2 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYLC2   2583
Cards
Entrez_Gene (NCBI)CYLC2  1539  cylicin 2
Aliases
GeneCards (Weizmann)CYLC2
Ensembl hg19 (Hinxton)ENSG00000155833 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155833 [Gene_View]  chr9:102995311-103018488 [Contig_View]  CYLC2 [Vega]
ICGC DataPortalENSG00000155833
TCGA cBioPortalCYLC2
AceView (NCBI)CYLC2
Genatlas (Paris)CYLC2
WikiGenes1539
SOURCE (Princeton)CYLC2
Genetics Home Reference (NIH)CYLC2
Genomic and cartography
GoldenPath hg38 (UCSC)CYLC2  -     chr9:102995311-103018488 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYLC2  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblCYLC2 - 9q31.1 [CytoView hg19]  CYLC2 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBICYLC2 [Mapview hg19]  CYLC2 [Mapview hg38]
OMIM604035   
Gene and transcription
Genbank (Entrez)AK313349 BC058038 BC114547 BX097520 Z46788
RefSeq transcript (Entrez)NM_001340
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYLC2
Cluster EST : UnigeneHs.3232 [ NCBI ]
CGAP (NCI)Hs.3232
Alternative Splicing GalleryENSG00000155833
Gene ExpressionCYLC2 [ NCBI-GEO ]   CYLC2 [ EBI - ARRAY_EXPRESS ]   CYLC2 [ SEEK ]   CYLC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CYLC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1539
GTEX Portal (Tissue expression)CYLC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14093   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14093  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14093
Splice isoforms : SwissVarQ14093
PhosPhoSitePlusQ14093
Domains : Interpro (EBI)CYLC    Cylicin_N   
Domain families : Pfam (Sanger)Cylicin_N (PF15241)   
Domain families : Pfam (NCBI)pfam15241   
Conserved Domain (NCBI)CYLC2
DMDM Disease mutations1539
Blocks (Seattle)CYLC2
SuperfamilyQ14093
Human Protein AtlasENSG00000155833
Peptide AtlasQ14093
HPRD04945
IPIIPI00028539   
Protein Interaction databases
DIP (DOE-UCLA)Q14093
IntAct (EBI)Q14093
FunCoupENSG00000155833
BioGRIDCYLC2
STRING (EMBL)CYLC2
ZODIACCYLC2
Ontologies - Pathways
QuickGOQ14093
Ontology : AmiGOstructural constituent of cytoskeleton  nucleus  cytoskeleton organization  multicellular organism development  spermatogenesis  cell differentiation  cytoskeletal calyx  
Ontology : EGO-EBIstructural constituent of cytoskeleton  nucleus  cytoskeleton organization  multicellular organism development  spermatogenesis  cell differentiation  cytoskeletal calyx  
NDEx NetworkCYLC2
Atlas of Cancer Signalling NetworkCYLC2
Wikipedia pathwaysCYLC2
Orthology - Evolution
OrthoDB1539
GeneTree (enSembl)ENSG00000155833
Phylogenetic Trees/Animal Genes : TreeFamCYLC2
HOVERGENQ14093
HOGENOMQ14093
Homologs : HomoloGeneCYLC2
Homology/Alignments : Family Browser (UCSC)CYLC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYLC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYLC2
dbVarCYLC2
ClinVarCYLC2
1000_GenomesCYLC2 
Exome Variant ServerCYLC2
ExAC (Exome Aggregation Consortium)CYLC2 (select the gene name)
Genetic variants : HAPMAP1539
Genomic Variants (DGV)CYLC2 [DGVbeta]
DECIPHERCYLC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYLC2 
Mutations
ICGC Data PortalCYLC2 
TCGA Data PortalCYLC2 
Broad Tumor PortalCYLC2
OASIS PortalCYLC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYLC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYLC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYLC2
DgiDB (Drug Gene Interaction Database)CYLC2
DoCM (Curated mutations)CYLC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYLC2 (select a term)
intoGenCYLC2
Cancer3DCYLC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604035   
Orphanet
MedgenCYLC2
Genetic Testing Registry CYLC2
NextProtQ14093 [Medical]
TSGene1539
GENETestsCYLC2
Target ValidationCYLC2
Huge Navigator CYLC2 [HugePedia]
snp3D : Map Gene to Disease1539
BioCentury BCIQCYLC2
ClinGenCYLC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1539
Chemical/Pharm GKB GenePA27083
Clinical trialCYLC2
Miscellaneous
canSAR (ICR)CYLC2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYLC2
EVEXCYLC2
GoPubMedCYLC2
iHOPCYLC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:13:07 CEST 2017

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