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CYP20A1 (cytochrome P450, family 20, subfamily A, polypeptide 1)

Identity

Alias_namescytochrome P450, family 20, subfamily A, polypeptide 1
Alias_symbol (synonym)CYP-M
Other alias
HGNC (Hugo) CYP20A1
LocusID (NCBI) 57404
Atlas_Id 62246
Location 2q33.2  [Link to chromosome band 2q33]
Location_base_pair Starts at 204103164 and ends at 204170563 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CYP20A1 (2q33.2) / CYP20A1 (2q33.2)CYP20A1 (2q33.2) / SPRY2 (13q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP20A1   20576
Cards
Entrez_Gene (NCBI)CYP20A1  57404  cytochrome P450, family 20, subfamily A, polypeptide 1
AliasesCYP-M
GeneCards (Weizmann)CYP20A1
Ensembl hg19 (Hinxton)ENSG00000119004 [Gene_View]  chr2:204103164-204170563 [Contig_View]  CYP20A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000119004 [Gene_View]  chr2:204103164-204170563 [Contig_View]  CYP20A1 [Vega]
ICGC DataPortalENSG00000119004
TCGA cBioPortalCYP20A1
AceView (NCBI)CYP20A1
Genatlas (Paris)CYP20A1
WikiGenes57404
SOURCE (Princeton)CYP20A1
Genetics Home Reference (NIH)CYP20A1
Genomic and cartography
GoldenPath hg19 (UCSC)CYP20A1  -     chr2:204103164-204170563 +  2q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYP20A1  -     2q33.2   [Description]    (hg38-Dec_2013)
EnsemblCYP20A1 - 2q33.2 [CytoView hg19]  CYP20A1 - 2q33.2 [CytoView hg38]
Mapping of homologs : NCBICYP20A1 [Mapview hg19]  CYP20A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF183412 AF289579 AK021770 AK297082 AK307931
RefSeq transcript (Entrez)NM_020674 NM_177538
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_007956 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CYP20A1
Cluster EST : UnigeneHs.707756 [ NCBI ]
CGAP (NCI)Hs.707756
Alternative Splicing GalleryENSG00000119004
Gene ExpressionCYP20A1 [ NCBI-GEO ]   CYP20A1 [ EBI - ARRAY_EXPRESS ]   CYP20A1 [ SEEK ]   CYP20A1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP20A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57404
GTEX Portal (Tissue expression)CYP20A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UW02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UW02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UW02
Splice isoforms : SwissVarQ6UW02
PhosPhoSitePlusQ6UW02
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_E_grp-I   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP20A1
DMDM Disease mutations57404
Blocks (Seattle)CYP20A1
SuperfamilyQ6UW02
Human Protein AtlasENSG00000119004
Peptide AtlasQ6UW02
HPRD07100
IPIIPI00419579   IPI00010218   IPI00926253   IPI00927615   IPI00925049   
Protein Interaction databases
DIP (DOE-UCLA)Q6UW02
IntAct (EBI)Q6UW02
FunCoupENSG00000119004
BioGRIDCYP20A1
STRING (EMBL)CYP20A1
ZODIACCYP20A1
Ontologies - Pathways
QuickGOQ6UW02
Ontology : AmiGOmonooxygenase activity  iron ion binding  membrane  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  oxidation-reduction process  
Ontology : EGO-EBImonooxygenase activity  iron ion binding  membrane  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  oxidation-reduction process  
NDEx NetworkCYP20A1
Atlas of Cancer Signalling NetworkCYP20A1
Wikipedia pathwaysCYP20A1
Orthology - Evolution
OrthoDB57404
GeneTree (enSembl)ENSG00000119004
Phylogenetic Trees/Animal Genes : TreeFamCYP20A1
HOVERGENQ6UW02
HOGENOMQ6UW02
Homologs : HomoloGeneCYP20A1
Homology/Alignments : Family Browser (UCSC)CYP20A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP20A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP20A1
dbVarCYP20A1
ClinVarCYP20A1
1000_GenomesCYP20A1 
Exome Variant ServerCYP20A1
ExAC (Exome Aggregation Consortium)CYP20A1 (select the gene name)
Genetic variants : HAPMAP57404
Genomic Variants (DGV)CYP20A1 [DGVbeta]
DECIPHER (Syndromes)2:204103164-204170563  ENSG00000119004
CONAN: Copy Number AnalysisCYP20A1 
Mutations
ICGC Data PortalCYP20A1 
TCGA Data PortalCYP20A1 
Broad Tumor PortalCYP20A1
OASIS PortalCYP20A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP20A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP20A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP20A1
DgiDB (Drug Gene Interaction Database)CYP20A1
DoCM (Curated mutations)CYP20A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP20A1 (select a term)
intoGenCYP20A1
Cancer3DCYP20A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCYP20A1
Genetic Testing Registry CYP20A1
NextProtQ6UW02 [Medical]
TSGene57404
GENETestsCYP20A1
Huge Navigator CYP20A1 [HugePedia]
snp3D : Map Gene to Disease57404
BioCentury BCIQCYP20A1
ClinGenCYP20A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57404
Chemical/Pharm GKB GenePA134911420
Clinical trialCYP20A1
Miscellaneous
canSAR (ICR)CYP20A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP20A1
EVEXCYP20A1
GoPubMedCYP20A1
iHOPCYP20A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:51 CET 2017

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