Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYP26B1 (cytochrome P450, family 26, subfamily B, polypeptide 1)

Identity

Other namesCYP26A2
P450RAI-2
P450RAI2
RHFCA
HGNC (Hugo) CYP26B1
LocusID (NCBI) 56603
Location 2p13.2
Location_base_pair Starts at 72356367 and ends at 72374991 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CYP26B1   20581
Cards
Entrez_Gene (NCBI)CYP26B1  56603  cytochrome P450, family 26, subfamily B, polypeptide 1
GeneCards (Weizmann)CYP26B1
Ensembl (Hinxton)ENSG00000003137 [Gene_View]  chr2:72356367-72374991 [Contig_View]  CYP26B1 [Vega]
AceView (NCBI)CYP26B1
Genatlas (Paris)CYP26B1
WikiGenes56603
SOURCE (Princeton)NM_001277742 NM_019885
Genomic and cartography
GoldenPath (UCSC)CYP26B1  -  2p13.2   chr2:72356367-72374991 -  2p13.2   [Description]    (hg19-Feb_2009)
EnsemblCYP26B1 - 2p13.2 [CytoView]
Mapping of homologs : NCBICYP26B1 [Mapview]
OMIM605207   614416   
Gene and transcription
Genbank (Entrez)AA484668 AF252297 AK294814 AK294933 AK295683
RefSeq transcript (Entrez)NM_001277742 NM_019885
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_007957 NT_022184 NW_001838769 NW_004929300
Consensus coding sequences : CCDS (NCBI)CYP26B1
Cluster EST : UnigeneHs.91546 [ NCBI ]
CGAP (NCI)Hs.91546
Alternative Splicing : Fast-db (Paris)GSHG0017723
Alternative Splicing GalleryENSG00000003137
Gene ExpressionCYP26B1 [ NCBI-GEO ]     CYP26B1 [ SEEK ]   CYP26B1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR63 (Uniprot)
NextProtQ9NR63  [Medical]
With graphics : InterProQ9NR63
Splice isoforms : SwissVarQ9NR63 (Swissvar)
Catalytic activity : Enzyme1.14.-.- [ Enzyme-Expasy ]   1.14.-.-1.14.-.- [ IntEnz-EBI ]   1.14.-.- [ BRENDA ]   1.14.-.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-IV   
Related proteins : CluSTrQ9NR63
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
DMDM Disease mutations56603
Blocks (Seattle)Q9NR63
Human Protein AtlasENSG00000003137
Peptide AtlasQ9NR63
HPRD05550
IPIIPI00008398   IPI00952755   IPI00917715   IPI00983422   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR63
IntAct (EBI)Q9NR63
FunCoupENSG00000003137
BioGRIDCYP26B1
InParanoidQ9NR63
Interologous Interaction database Q9NR63
IntegromeDBCYP26B1
STRING (EMBL)CYP26B1
Ontologies - Pathways
Ontology : AmiGOcell fate determination  retinoic acid binding  iron ion binding  endoplasmic reticulum  endoplasmic reticulum membrane  vitamin metabolic process  xenobiotic metabolic process  male meiosis  spermatogenesis  retinoic acid 4-hydroxylase activity  proximal/distal pattern formation  positive regulation of gene expression  heme binding  embryonic limb morphogenesis  retinoic acid catabolic process  tongue morphogenesis  small molecule metabolic process  retinoic acid receptor signaling pathway  negative regulation of retinoic acid receptor signaling pathway  oxidation-reduction process  bone morphogenesis  cellular response to retinoic acid  positive regulation of tongue muscle cell differentiation  
Ontology : EGO-EBIcell fate determination  retinoic acid binding  iron ion binding  endoplasmic reticulum  endoplasmic reticulum membrane  vitamin metabolic process  xenobiotic metabolic process  male meiosis  spermatogenesis  retinoic acid 4-hydroxylase activity  proximal/distal pattern formation  positive regulation of gene expression  heme binding  embryonic limb morphogenesis  retinoic acid catabolic process  tongue morphogenesis  small molecule metabolic process  retinoic acid receptor signaling pathway  negative regulation of retinoic acid receptor signaling pathway  oxidation-reduction process  bone morphogenesis  cellular response to retinoic acid  positive regulation of tongue muscle cell differentiation  
Pathways : KEGGRetinol metabolism   
REACTOMECYP26B1
Protein Interaction DatabaseCYP26B1
Wikipedia pathwaysCYP26B1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CYP26B1
SNP (GeneSNP Utah)CYP26B1
SNP : HGBaseCYP26B1
Genetic variants : HAPMAPCYP26B1
1000_GenomesCYP26B1 
ICGC programENSG00000003137 
Somatic Mutations in Cancer : COSMICCYP26B1 
CONAN: Copy Number AnalysisCYP26B1 
Mutations and Diseases : HGMDCYP26B1
OMIM605207    614416   
GENETestsCYP26B1
Disease Genetic AssociationCYP26B1
Huge Navigator CYP26B1 [HugePedia]  CYP26B1 [HugeCancerGEM]
Genomic VariantsCYP26B1  CYP26B1 [DGVbeta]
Exome VariantCYP26B1
dbVarCYP26B1
ClinVarCYP26B1
snp3D : Map Gene to Disease56603
General knowledge
Homologs : HomoloGeneCYP26B1
Homology/Alignments : Family Browser (UCSC)CYP26B1
Phylogenetic Trees/Animal Genes : TreeFamCYP26B1
Chemical/Protein Interactions : CTD56603
Chemical/Pharm GKB GenePA134879191
Clinical trialCYP26B1
Cancer Resource (Charite)ENSG00000003137
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineCYP26B1
iHOPCYP26B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:57:22 CEST 2014

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