Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CYP26C1 (cytochrome P450 family 26 subfamily C member 1)

Identity

Alias_namescytochrome P450
Other aliasFFDD4
HGNC (Hugo) CYP26C1
LocusID (NCBI) 340665
Atlas_Id 56075
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 93061264 and ends at 93068697 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYP26C1   20577
Cards
Entrez_Gene (NCBI)CYP26C1  340665  cytochrome P450 family 26 subfamily C member 1
AliasesFFDD4
GeneCards (Weizmann)CYP26C1
Ensembl hg19 (Hinxton)ENSG00000187553 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187553 [Gene_View]  ENSG00000187553 [Sequence]  chr10:93061264-93068697 [Contig_View]  CYP26C1 [Vega]
ICGC DataPortalENSG00000187553
TCGA cBioPortalCYP26C1
AceView (NCBI)CYP26C1
Genatlas (Paris)CYP26C1
WikiGenes340665
SOURCE (Princeton)CYP26C1
Genetics Home Reference (NIH)CYP26C1
Genomic and cartography
GoldenPath hg38 (UCSC)CYP26C1  -     chr10:93061264-93068697 +  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP26C1  -     10q23.33   [Description]    (hg19-Feb_2009)
EnsemblCYP26C1 - 10q23.33 [CytoView hg19]  CYP26C1 - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBICYP26C1 [Mapview hg19]  CYP26C1 [Mapview hg38]
OMIM608428   614974   
Gene and transcription
Genbank (Entrez)AK127234 AK131099 AY356349
RefSeq transcript (Entrez)NM_183374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYP26C1
Cluster EST : UnigeneHs.369993 [ NCBI ]
CGAP (NCI)Hs.369993
Alternative Splicing GalleryENSG00000187553
Gene ExpressionCYP26C1 [ NCBI-GEO ]   CYP26C1 [ EBI - ARRAY_EXPRESS ]   CYP26C1 [ SEEK ]   CYP26C1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP26C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340665
GTEX Portal (Tissue expression)CYP26C1
Human Protein AtlasENSG00000187553-CYP26C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6V0L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6V0L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6V0L0
Splice isoforms : SwissVarQ6V0L0
PhosPhoSitePlusQ6V0L0
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-IV    Cyt_P450_sf   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP26C1
DMDM Disease mutations340665
Blocks (Seattle)CYP26C1
SuperfamilyQ6V0L0
Human Protein Atlas [tissue]ENSG00000187553-CYP26C1 [tissue]
Peptide AtlasQ6V0L0
HPRD12230
IPIIPI00373823   IPI00867661   
Protein Interaction databases
DIP (DOE-UCLA)Q6V0L0
IntAct (EBI)Q6V0L0
FunCoupENSG00000187553
BioGRIDCYP26C1
STRING (EMBL)CYP26C1
ZODIACCYP26C1
Ontologies - Pathways
QuickGOQ6V0L0
Ontology : AmiGOretinoic acid binding  iron ion binding  endoplasmic reticulum membrane  vitamin metabolic process  central nervous system development  retinoic acid 4-hydroxylase activity  retinoic acid 4-hydroxylase activity  anterior/posterior pattern specification  neural crest cell development  integral component of membrane  sterol metabolic process  oxidoreductase activity  heme binding  retinoic acid catabolic process  organelle fusion  negative regulation of retinoic acid receptor signaling pathway  oxidation-reduction process  oxidation-reduction process  
Ontology : EGO-EBIretinoic acid binding  iron ion binding  endoplasmic reticulum membrane  vitamin metabolic process  central nervous system development  retinoic acid 4-hydroxylase activity  retinoic acid 4-hydroxylase activity  anterior/posterior pattern specification  neural crest cell development  integral component of membrane  sterol metabolic process  oxidoreductase activity  heme binding  retinoic acid catabolic process  organelle fusion  negative regulation of retinoic acid receptor signaling pathway  oxidation-reduction process  oxidation-reduction process  
Pathways : KEGGRetinol metabolism   
NDEx NetworkCYP26C1
Atlas of Cancer Signalling NetworkCYP26C1
Wikipedia pathwaysCYP26C1
Orthology - Evolution
OrthoDB340665
GeneTree (enSembl)ENSG00000187553
Phylogenetic Trees/Animal Genes : TreeFamCYP26C1
HOVERGENQ6V0L0
HOGENOMQ6V0L0
Homologs : HomoloGeneCYP26C1
Homology/Alignments : Family Browser (UCSC)CYP26C1
Gene fusions - Rearrangements
Fusion : QuiverCYP26C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP26C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP26C1
dbVarCYP26C1
ClinVarCYP26C1
1000_GenomesCYP26C1 
Exome Variant ServerCYP26C1
ExAC (Exome Aggregation Consortium)ENSG00000187553
GNOMAD BrowserENSG00000187553
Varsome BrowserCYP26C1
Genetic variants : HAPMAP340665
Genomic Variants (DGV)CYP26C1 [DGVbeta]
DECIPHERCYP26C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP26C1 
Mutations
ICGC Data PortalCYP26C1 
TCGA Data PortalCYP26C1 
Broad Tumor PortalCYP26C1
OASIS PortalCYP26C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP26C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP26C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP26C1
DgiDB (Drug Gene Interaction Database)CYP26C1
DoCM (Curated mutations)CYP26C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP26C1 (select a term)
intoGenCYP26C1
Cancer3DCYP26C1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608428    614974   
Orphanet22734   
DisGeNETCYP26C1
MedgenCYP26C1
Genetic Testing Registry CYP26C1
NextProtQ6V0L0 [Medical]
TSGene340665
GENETestsCYP26C1
Target ValidationCYP26C1
Huge Navigator CYP26C1 [HugePedia]
snp3D : Map Gene to Disease340665
BioCentury BCIQCYP26C1
ClinGenCYP26C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340665
Chemical/Pharm GKB GenePA134913464
Clinical trialCYP26C1
Miscellaneous
canSAR (ICR)CYP26C1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP26C1
EVEXCYP26C1
GoPubMedCYP26C1
iHOPCYP26C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:18:09 CEST 2018
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