Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYP27C1 (cytochrome P450 family 27 subfamily C member 1)

Identity

Alias_namescytochrome P450, family 27, subfamily C, polypeptide 1
Alias_symbol (synonym)FLJ16008
Other alias-
HGNC (Hugo) CYP27C1
LocusID (NCBI) 339761
Atlas_Id 62249
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 127183836 and ends at 127205767 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCHSD2 (11q13.4) / CYP27C1 (2q14.3)SPIRE1 (18p11.21) / CYP27C1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP27C1   33480
Cards
Entrez_Gene (NCBI)CYP27C1  339761  cytochrome P450 family 27 subfamily C member 1
Aliases
GeneCards (Weizmann)CYP27C1
Ensembl hg19 (Hinxton)ENSG00000186684 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186684 [Gene_View]  chr2:127183836-127205767 [Contig_View]  CYP27C1 [Vega]
ICGC DataPortalENSG00000186684
TCGA cBioPortalCYP27C1
AceView (NCBI)CYP27C1
Genatlas (Paris)CYP27C1
WikiGenes339761
SOURCE (Princeton)CYP27C1
Genetics Home Reference (NIH)CYP27C1
Genomic and cartography
GoldenPath hg38 (UCSC)CYP27C1  -     chr2:127183836-127205767 -  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP27C1  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblCYP27C1 - 2q14.3 [CytoView hg19]  CYP27C1 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBICYP27C1 [Mapview hg19]  CYP27C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131190 BC039307
RefSeq transcript (Entrez)NM_001001665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYP27C1
Cluster EST : UnigeneHs.407639 [ NCBI ]
CGAP (NCI)Hs.407639
Alternative Splicing GalleryENSG00000186684
Gene ExpressionCYP27C1 [ NCBI-GEO ]   CYP27C1 [ EBI - ARRAY_EXPRESS ]   CYP27C1 [ SEEK ]   CYP27C1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP27C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339761
GTEX Portal (Tissue expression)CYP27C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0S4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0S4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0S4
Splice isoforms : SwissVarQ4G0S4
PhosPhoSitePlusQ4G0S4
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP27C1
DMDM Disease mutations339761
Blocks (Seattle)CYP27C1
SuperfamilyQ4G0S4
Human Protein AtlasENSG00000186684
Peptide AtlasQ4G0S4
HPRD13360
IPIIPI00256434   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0S4
IntAct (EBI)Q4G0S4
FunCoupENSG00000186684
BioGRIDCYP27C1
STRING (EMBL)CYP27C1
ZODIACCYP27C1
Ontologies - Pathways
QuickGOQ4G0S4
Ontology : AmiGOmonooxygenase activity  iron ion binding  membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  oxidation-reduction process  
Ontology : EGO-EBImonooxygenase activity  iron ion binding  membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  oxidation-reduction process  
NDEx NetworkCYP27C1
Atlas of Cancer Signalling NetworkCYP27C1
Wikipedia pathwaysCYP27C1
Orthology - Evolution
OrthoDB339761
GeneTree (enSembl)ENSG00000186684
Phylogenetic Trees/Animal Genes : TreeFamCYP27C1
HOVERGENQ4G0S4
HOGENOMQ4G0S4
Homologs : HomoloGeneCYP27C1
Homology/Alignments : Family Browser (UCSC)CYP27C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP27C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP27C1
dbVarCYP27C1
ClinVarCYP27C1
1000_GenomesCYP27C1 
Exome Variant ServerCYP27C1
ExAC (Exome Aggregation Consortium)CYP27C1 (select the gene name)
Genetic variants : HAPMAP339761
Genomic Variants (DGV)CYP27C1 [DGVbeta]
DECIPHERCYP27C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP27C1 
Mutations
ICGC Data PortalCYP27C1 
TCGA Data PortalCYP27C1 
Broad Tumor PortalCYP27C1
OASIS PortalCYP27C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP27C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP27C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP27C1
DgiDB (Drug Gene Interaction Database)CYP27C1
DoCM (Curated mutations)CYP27C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP27C1 (select a term)
intoGenCYP27C1
Cancer3DCYP27C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCYP27C1
Genetic Testing Registry CYP27C1
NextProtQ4G0S4 [Medical]
TSGene339761
GENETestsCYP27C1
Target ValidationCYP27C1
Huge Navigator CYP27C1 [HugePedia]
snp3D : Map Gene to Disease339761
BioCentury BCIQCYP27C1
ClinGenCYP27C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339761
Chemical/Pharm GKB GenePA162383091
Clinical trialCYP27C1
Miscellaneous
canSAR (ICR)CYP27C1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP27C1
EVEXCYP27C1
GoPubMedCYP27C1
iHOPCYP27C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:05 CEST 2017

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