Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYP2A13 (cytochrome P450 family 2 subfamily A member 13)

Identity

Alias_namescytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 13
cytochrome P450, family 2, subfamily A, polypeptide 13
Alias_symbol (synonym)CPAD
CYP2A
Other aliasCYPIIA13
HGNC (Hugo) CYP2A13
LocusID (NCBI) 1553
Atlas_Id 43982
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41088451 and ends at 41096195 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP2A13   2608
Cards
Entrez_Gene (NCBI)CYP2A13  1553  cytochrome P450 family 2 subfamily A member 13
AliasesCPAD; CYP2A; CYPIIA13
GeneCards (Weizmann)CYP2A13
Ensembl hg19 (Hinxton)ENSG00000197838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197838 [Gene_View]  chr19:41088451-41096195 [Contig_View]  CYP2A13 [Vega]
ICGC DataPortalENSG00000197838
TCGA cBioPortalCYP2A13
AceView (NCBI)CYP2A13
Genatlas (Paris)CYP2A13
WikiGenes1553
SOURCE (Princeton)CYP2A13
Genetics Home Reference (NIH)CYP2A13
Genomic and cartography
GoldenPath hg38 (UCSC)CYP2A13  -     chr19:41088451-41096195 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP2A13  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCYP2A13 - 19q13.2 [CytoView hg19]  CYP2A13 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICYP2A13 [Mapview hg19]  CYP2A13 [Mapview hg38]
OMIM608055   
Gene and transcription
Genbank (Entrez)AF209774 AY513604 AY513605 AY513606 AY513607
RefSeq transcript (Entrez)NM_000766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYP2A13
Cluster EST : UnigeneHs.567252 [ NCBI ]
CGAP (NCI)Hs.567252
Alternative Splicing GalleryENSG00000197838
Gene ExpressionCYP2A13 [ NCBI-GEO ]   CYP2A13 [ EBI - ARRAY_EXPRESS ]   CYP2A13 [ SEEK ]   CYP2A13 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP2A13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1553
GTEX Portal (Tissue expression)CYP2A13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16696
Splice isoforms : SwissVarQ16696
Catalytic activity : Enzyme1.14.14.1 [ Enzyme-Expasy ]   1.14.14.11.14.14.1 [ IntEnz-EBI ]   1.14.14.1 [ BRENDA ]   1.14.14.1 [ KEGG ]   
PhosPhoSitePlusQ16696
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I    Cyt_P450_E_grp-I_CYP2A-like   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP2A13
DMDM Disease mutations1553
Blocks (Seattle)CYP2A13
PDB (SRS)2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
PDB (PDBSum)2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
PDB (IMB)2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
PDB (RSDB)2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
Structural Biology KnowledgeBase2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
SCOP (Structural Classification of Proteins)2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
CATH (Classification of proteins structures)2P85    2PG5    2PG6    2PG7    3T3S    4EJG    4EJH    4EJI   
SuperfamilyQ16696
Human Protein AtlasENSG00000197838
Peptide AtlasQ16696
HPRD07454
IPIIPI00003480   
Protein Interaction databases
DIP (DOE-UCLA)Q16696
IntAct (EBI)Q16696
FunCoupENSG00000197838
BioGRIDCYP2A13
STRING (EMBL)CYP2A13
ZODIACCYP2A13
Ontologies - Pathways
QuickGOQ16696
Ontology : AmiGOiron ion binding  endoplasmic reticulum membrane  xenobiotic metabolic process  coumarin 7-hydroxylase activity  arachidonic acid epoxygenase activity  coumarin metabolic process  epoxygenase P450 pathway  oxygen binding  heme binding  organelle membrane  oxidation-reduction process  aromatase activity  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum membrane  xenobiotic metabolic process  coumarin 7-hydroxylase activity  arachidonic acid epoxygenase activity  coumarin metabolic process  epoxygenase P450 pathway  oxygen binding  heme binding  organelle membrane  oxidation-reduction process  aromatase activity  
Pathways : KEGGMetabolism of xenobiotics by cytochrome P450    Chemical carcinogenesis   
NDEx NetworkCYP2A13
Atlas of Cancer Signalling NetworkCYP2A13
Wikipedia pathwaysCYP2A13
Orthology - Evolution
OrthoDB1553
GeneTree (enSembl)ENSG00000197838
Phylogenetic Trees/Animal Genes : TreeFamCYP2A13
HOVERGENQ16696
HOGENOMQ16696
Homologs : HomoloGeneCYP2A13
Homology/Alignments : Family Browser (UCSC)CYP2A13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP2A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP2A13
dbVarCYP2A13
ClinVarCYP2A13
1000_GenomesCYP2A13 
Exome Variant ServerCYP2A13
ExAC (Exome Aggregation Consortium)CYP2A13 (select the gene name)
Genetic variants : HAPMAP1553
Genomic Variants (DGV)CYP2A13 [DGVbeta]
DECIPHERCYP2A13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP2A13 
Mutations
ICGC Data PortalCYP2A13 
TCGA Data PortalCYP2A13 
Broad Tumor PortalCYP2A13
OASIS PortalCYP2A13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP2A13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP2A13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP2A13
DgiDB (Drug Gene Interaction Database)CYP2A13
DoCM (Curated mutations)CYP2A13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP2A13 (select a term)
intoGenCYP2A13
Cancer3DCYP2A13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608055   
Orphanet
MedgenCYP2A13
Genetic Testing Registry CYP2A13
NextProtQ16696 [Medical]
TSGene1553
GENETestsCYP2A13
Target ValidationCYP2A13
Huge Navigator CYP2A13 [HugePedia]
snp3D : Map Gene to Disease1553
BioCentury BCIQCYP2A13
ClinGenCYP2A13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1553
Chemical/Pharm GKB GenePA27101
Clinical trialCYP2A13
Miscellaneous
canSAR (ICR)CYP2A13 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP2A13
EVEXCYP2A13
GoPubMedCYP2A13
iHOPCYP2A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:33 CEST 2017

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