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CYP2S1 (cytochrome P450, family 2, subfamily S, polypeptide 1)

Identity

Other names-
HGNC (Hugo) CYP2S1
LocusID (NCBI) 29785
Location 19q13.2
Location_base_pair Starts at 41699115 and ends at 41713444 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYP2S1   15654
Cards
Entrez_Gene (NCBI)CYP2S1  29785  cytochrome P450, family 2, subfamily S, polypeptide 1
GeneCards (Weizmann)CYP2S1
Ensembl (Hinxton)ENSG00000167600 [Gene_View]  chr19:41699115-41713444 [Contig_View]  CYP2S1 [Vega]
AceView (NCBI)CYP2S1
Genatlas (Paris)CYP2S1
WikiGenes29785
SOURCE (Princeton)NM_030622
Genomic and cartography
GoldenPath (UCSC)CYP2S1  -  19q13.2   chr19:41699115-41713444 +  19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCYP2S1 - 19q13.2 [CytoView]
Mapping of homologs : NCBICYP2S1 [Mapview]
OMIM611529   
Gene and transcription
Genbank (Entrez)AA316622 AF335278 AK027605 AK296087 AY358603
RefSeq transcript (Entrez)NM_030622
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_007933 NT_011109 NW_001838496 NW_004929415
Consensus coding sequences : CCDS (NCBI)CYP2S1
Cluster EST : UnigeneHs.98370 [ NCBI ]
CGAP (NCI)Hs.98370
Alternative Splicing : Fast-db (Paris)GSHG0014942
Alternative Splicing GalleryENSG00000167600
Gene ExpressionCYP2S1 [ NCBI-GEO ]     CYP2S1 [ SEEK ]   CYP2S1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SQ9 (Uniprot)
NextProtQ96SQ9  [Medical]
With graphics : InterProQ96SQ9
Splice isoforms : SwissVarQ96SQ9 (Swissvar)
Catalytic activity : Enzyme1.14.14.1 [ Enzyme-Expasy ]   1.14.14.11.14.14.1 [ IntEnz-EBI ]   1.14.14.1 [ BRENDA ]   1.14.14.1 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I    Cyt_P450_E_grp-I_CYP2A-like   
Related proteins : CluSTrQ96SQ9
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
DMDM Disease mutations29785
Blocks (Seattle)Q96SQ9
Human Protein AtlasENSG00000167600
Peptide AtlasQ96SQ9
HPRD07481
IPIIPI00396661   IPI00164018   IPI01012410   
Protein Interaction databases
DIP (DOE-UCLA)Q96SQ9
IntAct (EBI)Q96SQ9
FunCoupENSG00000167600
BioGRIDCYP2S1
InParanoidQ96SQ9
Interologous Interaction database Q96SQ9
IntegromeDBCYP2S1
STRING (EMBL)CYP2S1
Ontologies - Pathways
Ontology : AmiGOmonooxygenase activity  iron ion binding  endoplasmic reticulum  endoplasmic reticulum membrane  xenobiotic metabolic process  heme binding  small molecule metabolic process  oxidation-reduction process  aromatase activity  
Ontology : EGO-EBImonooxygenase activity  iron ion binding  endoplasmic reticulum  endoplasmic reticulum membrane  xenobiotic metabolic process  heme binding  small molecule metabolic process  oxidation-reduction process  aromatase activity  
Pathways : KEGGRetinol metabolism    Metabolism of xenobiotics by cytochrome P450   
REACTOMECYP2S1
Protein Interaction DatabaseCYP2S1
Wikipedia pathwaysCYP2S1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CYP2S1
SNP (GeneSNP Utah)CYP2S1
SNP : HGBaseCYP2S1
Genetic variants : HAPMAPCYP2S1
1000_GenomesCYP2S1 
ICGC programENSG00000167600 
Somatic Mutations in Cancer : COSMICCYP2S1 
CONAN: Copy Number AnalysisCYP2S1 
Mutations and Diseases : HGMDCYP2S1
OMIM611529   
GENETestsCYP2S1
Disease Genetic AssociationCYP2S1
Huge Navigator CYP2S1 [HugePedia]  CYP2S1 [HugeCancerGEM]
Genomic VariantsCYP2S1  CYP2S1 [DGVbeta]
Exome VariantCYP2S1
dbVarCYP2S1
ClinVarCYP2S1
snp3D : Map Gene to Disease29785
General knowledge
Homologs : HomoloGeneCYP2S1
Homology/Alignments : Family Browser (UCSC)CYP2S1
Phylogenetic Trees/Animal Genes : TreeFamCYP2S1
Chemical/Protein Interactions : CTD29785
Chemical/Pharm GKB GenePA27113
Clinical trialCYP2S1
Cancer Resource (Charite)ENSG00000167600
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineCYP2S1
iHOPCYP2S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:08:45 CEST 2014

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