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CYP2S1 (cytochrome P450 family 2 subfamily S member 1)

Identity

Other namesCYPIIS1
HGNC (Hugo) CYP2S1
LocusID (NCBI) 29785
Atlas_Id 40249
Location 19q13.2
Location_base_pair Starts at 41699112 and ends at 41713444 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CAPN5 (11q13.5) / CYP2S1 (19q13.2)VASP (19q13.32) / CYP2S1 (19q13.2)VASP 19q13.32 / CYP2S1 19q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP2S1   15654
Cards
Entrez_Gene (NCBI)CYP2S1  29785  cytochrome P450 family 2 subfamily S member 1
AliasesCYPIIS1
GeneCards (Weizmann)CYP2S1
Ensembl hg19 (Hinxton)ENSG00000167600 [Gene_View]  chr19:41699112-41713444 [Contig_View]  CYP2S1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167600 [Gene_View]  chr19:41699112-41713444 [Contig_View]  CYP2S1 [Vega]
ICGC DataPortalENSG00000167600
TCGA cBioPortalCYP2S1
AceView (NCBI)CYP2S1
Genatlas (Paris)CYP2S1
WikiGenes29785
SOURCE (Princeton)CYP2S1
Genomic and cartography
GoldenPath hg19 (UCSC)CYP2S1  -     chr19:41699112-41713444 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYP2S1  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblCYP2S1 - 19q13.2 [CytoView hg19]  CYP2S1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICYP2S1 [Mapview hg19]  CYP2S1 [Mapview hg38]
OMIM611529   
Gene and transcription
Genbank (Entrez)AA316622 AF335278 AK027605 AK296087 AY358603
RefSeq transcript (Entrez)NM_030622
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_007933 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CYP2S1
Cluster EST : UnigeneHs.98370 [ NCBI ]
CGAP (NCI)Hs.98370
Alternative Splicing GalleryENSG00000167600
Gene ExpressionCYP2S1 [ NCBI-GEO ]   CYP2S1 [ EBI - ARRAY_EXPRESS ]   CYP2S1 [ SEEK ]   CYP2S1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP2S1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29785
GTEX Portal (Tissue expression)CYP2S1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SQ9 (Uniprot)
NextProtQ96SQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SQ9
Splice isoforms : SwissVarQ96SQ9 (Swissvar)
Catalytic activity : Enzyme1.14.14.1 [ Enzyme-Expasy ]   1.14.14.11.14.14.1 [ IntEnz-EBI ]   1.14.14.1 [ BRENDA ]   1.14.14.1 [ KEGG ]   
PhosPhoSitePlusQ96SQ9
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I    Cyt_P450_E_grp-I_CYP2A-like   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
DMDM Disease mutations29785
Blocks (Seattle)CYP2S1
SuperfamilyQ96SQ9
Human Protein AtlasENSG00000167600
Peptide AtlasQ96SQ9
HPRD07481
IPIIPI00396661   IPI00164018   IPI01012410   
Protein Interaction databases
DIP (DOE-UCLA)Q96SQ9
IntAct (EBI)Q96SQ9
FunCoupENSG00000167600
BioGRIDCYP2S1
STRING (EMBL)CYP2S1
ZODIACCYP2S1
Ontologies - Pathways
QuickGOQ96SQ9
Ontology : AmiGOiron ion binding  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  steroid hydroxylase activity  retinoic acid 4-hydroxylase activity  heme binding  oxidation-reduction process  aromatase activity  
Ontology : EGO-EBIiron ion binding  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  steroid hydroxylase activity  retinoic acid 4-hydroxylase activity  heme binding  oxidation-reduction process  aromatase activity  
Pathways : KEGGRetinol metabolism    Metabolism of xenobiotics by cytochrome P450   
NDEx Network
Atlas of Cancer Signalling NetworkCYP2S1
Wikipedia pathwaysCYP2S1
Orthology - Evolution
OrthoDB29785
GeneTree (enSembl)ENSG00000167600
Phylogenetic Trees/Animal Genes : TreeFamCYP2S1
Homologs : HomoloGeneCYP2S1
Homology/Alignments : Family Browser (UCSC)CYP2S1
Gene fusions - Rearrangements
Fusion: TCGAVASP 19q13.32 CYP2S1 19q13.2 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCYP2S1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP2S1
dbVarCYP2S1
ClinVarCYP2S1
1000_GenomesCYP2S1 
Exome Variant ServerCYP2S1
ExAC (Exome Aggregation Consortium)CYP2S1 (select the gene name)
Genetic variants : HAPMAP29785
Genomic Variants (DGV)CYP2S1 [DGVbeta]
Mutations
ICGC Data PortalCYP2S1 
TCGA Data PortalCYP2S1 
Broad Tumor PortalCYP2S1
OASIS PortalCYP2S1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP2S1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP2S1
DgiDB (Drug Gene Interaction Database)CYP2S1
DoCM (Curated mutations)CYP2S1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP2S1 (select a term)
intoGenCYP2S1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:41699112-41713444  ENSG00000167600
CONAN: Copy Number AnalysisCYP2S1 
Mutations and Diseases : HGMDCYP2S1
OMIM611529   
MedgenCYP2S1
Genetic Testing Registry CYP2S1
NextProtQ96SQ9 [Medical]
TSGene29785
GENETestsCYP2S1
Huge Navigator CYP2S1 [HugePedia]
snp3D : Map Gene to Disease29785
BioCentury BCIQCYP2S1
ClinGenCYP2S1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29785
Chemical/Pharm GKB GenePA27113
Clinical trialCYP2S1
Miscellaneous
canSAR (ICR)CYP2S1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP2S1
EVEXCYP2S1
GoPubMedCYP2S1
iHOPCYP2S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:59:40 CEST 2016

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