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CYP4F11 (cytochrome P450, family 4, subfamily F, polypeptide 11)

Identity

Alias_namescytochrome P450, subfamily IVF, polypeptide 11
cytochrome P450, family 4, subfamily F, polypeptide 11
Other aliasCYPIVF11
HGNC (Hugo) CYP4F11
LocusID (NCBI) 57834
Atlas_Id 62259
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 16023180 and ends at 16045676 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AP1M1 (19p13.11) / CYP4F11 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP4F11   13265
Cards
Entrez_Gene (NCBI)CYP4F11  57834  cytochrome P450, family 4, subfamily F, polypeptide 11
AliasesCYPIVF11
GeneCards (Weizmann)CYP4F11
Ensembl hg19 (Hinxton)ENSG00000171903 [Gene_View]  chr19:16023180-16045676 [Contig_View]  CYP4F11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171903 [Gene_View]  chr19:16023180-16045676 [Contig_View]  CYP4F11 [Vega]
ICGC DataPortalENSG00000171903
TCGA cBioPortalCYP4F11
AceView (NCBI)CYP4F11
Genatlas (Paris)CYP4F11
WikiGenes57834
SOURCE (Princeton)CYP4F11
Genetics Home Reference (NIH)CYP4F11
Genomic and cartography
GoldenPath hg19 (UCSC)CYP4F11  -     chr19:16023180-16045676 -  19p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYP4F11  -     19p13.12   [Description]    (hg38-Dec_2013)
EnsemblCYP4F11 - 19p13.12 [CytoView hg19]  CYP4F11 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBICYP4F11 [Mapview hg19]  CYP4F11 [Mapview hg38]
OMIM611517   
Gene and transcription
Genbank (Entrez)AF236085 AK125714 AK289424 AK309292 AL833940
RefSeq transcript (Entrez)NM_001128932 NM_021187
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_008335 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)CYP4F11
Cluster EST : UnigeneHs.187393 [ NCBI ]
CGAP (NCI)Hs.187393
Alternative Splicing GalleryENSG00000171903
Gene ExpressionCYP4F11 [ NCBI-GEO ]   CYP4F11 [ EBI - ARRAY_EXPRESS ]   CYP4F11 [ SEEK ]   CYP4F11 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4F11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57834
GTEX Portal (Tissue expression)CYP4F11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBI6
Splice isoforms : SwissVarQ9HBI6
PhosPhoSitePlusQ9HBI6
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP4F11
DMDM Disease mutations57834
Blocks (Seattle)CYP4F11
SuperfamilyQ9HBI6
Human Protein AtlasENSG00000171903
Peptide AtlasQ9HBI6
HPRD07101
IPIIPI00307483   IPI00470536   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBI6
IntAct (EBI)Q9HBI6
FunCoupENSG00000171903
BioGRIDCYP4F11
STRING (EMBL)CYP4F11
ZODIACCYP4F11
Ontologies - Pathways
QuickGOQ9HBI6
Ontology : AmiGOiron ion binding  endoplasmic reticulum membrane  xenobiotic metabolic process  inflammatory response  blood coagulation  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen  heme binding  menaquinone catabolic process  phylloquinone catabolic process  phylloquinone catabolic process  vitamin K catabolic process  small molecule metabolic process  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum membrane  xenobiotic metabolic process  inflammatory response  blood coagulation  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen  heme binding  menaquinone catabolic process  phylloquinone catabolic process  phylloquinone catabolic process  vitamin K catabolic process  small molecule metabolic process  oxidation-reduction process  
NDEx NetworkCYP4F11
Atlas of Cancer Signalling NetworkCYP4F11
Wikipedia pathwaysCYP4F11
Orthology - Evolution
OrthoDB57834
GeneTree (enSembl)ENSG00000171903
Phylogenetic Trees/Animal Genes : TreeFamCYP4F11
HOVERGENQ9HBI6
HOGENOMQ9HBI6
Homologs : HomoloGeneCYP4F11
Homology/Alignments : Family Browser (UCSC)CYP4F11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP4F11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4F11
dbVarCYP4F11
ClinVarCYP4F11
1000_GenomesCYP4F11 
Exome Variant ServerCYP4F11
ExAC (Exome Aggregation Consortium)CYP4F11 (select the gene name)
Genetic variants : HAPMAP57834
Genomic Variants (DGV)CYP4F11 [DGVbeta]
DECIPHER (Syndromes)19:16023180-16045676  ENSG00000171903
CONAN: Copy Number AnalysisCYP4F11 
Mutations
ICGC Data PortalCYP4F11 
TCGA Data PortalCYP4F11 
Broad Tumor PortalCYP4F11
OASIS PortalCYP4F11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP4F11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP4F11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP4F11
DgiDB (Drug Gene Interaction Database)CYP4F11
DoCM (Curated mutations)CYP4F11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP4F11 (select a term)
intoGenCYP4F11
Cancer3DCYP4F11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611517   
Orphanet
MedgenCYP4F11
Genetic Testing Registry CYP4F11
NextProtQ9HBI6 [Medical]
TSGene57834
GENETestsCYP4F11
Huge Navigator CYP4F11 [HugePedia]
snp3D : Map Gene to Disease57834
BioCentury BCIQCYP4F11
ClinGenCYP4F11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57834
Chemical/Pharm GKB GenePA27120
Clinical trialCYP4F11
Miscellaneous
canSAR (ICR)CYP4F11 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP4F11
EVEXCYP4F11
GoPubMedCYP4F11
iHOPCYP4F11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:54 CET 2017

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