Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYP4F22 (cytochrome P450 family 4 subfamily F member 22)

Identity

Alias_namescytochrome P450, family 4, subfamily F, polypeptide 22
Alias_symbol (synonym)FLJ39501
Other aliasARCI5
INLNE
LI3
HGNC (Hugo) CYP4F22
LocusID (NCBI) 126410
Atlas_Id 62261
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 15508525 and ends at 15552317 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP4F22   26820
Cards
Entrez_Gene (NCBI)CYP4F22  126410  cytochrome P450 family 4 subfamily F member 22
AliasesARCI5; INLNE; LI3
GeneCards (Weizmann)CYP4F22
Ensembl hg19 (Hinxton)ENSG00000171954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171954 [Gene_View]  chr19:15508525-15552317 [Contig_View]  CYP4F22 [Vega]
ICGC DataPortalENSG00000171954
TCGA cBioPortalCYP4F22
AceView (NCBI)CYP4F22
Genatlas (Paris)CYP4F22
WikiGenes126410
SOURCE (Princeton)CYP4F22
Genetics Home Reference (NIH)CYP4F22
Genomic and cartography
GoldenPath hg38 (UCSC)CYP4F22  -     chr19:15508525-15552317 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP4F22  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblCYP4F22 - 19p13.12 [CytoView hg19]  CYP4F22 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBICYP4F22 [Mapview hg19]  CYP4F22 [Mapview hg38]
OMIM611495   
Gene and transcription
Genbank (Entrez)AI341068 AK096820 BC069351 BC093894 BC093896
RefSeq transcript (Entrez)NM_173483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYP4F22
Cluster EST : UnigeneHs.156452 [ NCBI ]
CGAP (NCI)Hs.156452
Alternative Splicing GalleryENSG00000171954
Gene ExpressionCYP4F22 [ NCBI-GEO ]   CYP4F22 [ EBI - ARRAY_EXPRESS ]   CYP4F22 [ SEEK ]   CYP4F22 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4F22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126410
GTEX Portal (Tissue expression)CYP4F22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NT55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NT55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NT55
Splice isoforms : SwissVarQ6NT55
PhosPhoSitePlusQ6NT55
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP4F22
DMDM Disease mutations126410
Blocks (Seattle)CYP4F22
SuperfamilyQ6NT55
Human Protein AtlasENSG00000171954
Peptide AtlasQ6NT55
HPRD08256
IPIIPI00182560   
Protein Interaction databases
DIP (DOE-UCLA)Q6NT55
IntAct (EBI)Q6NT55
FunCoupENSG00000171954
BioGRIDCYP4F22
STRING (EMBL)CYP4F22
ZODIACCYP4F22
Ontologies - Pathways
QuickGOQ6NT55
Ontology : AmiGOmonooxygenase activity  iron ion binding  endoplasmic reticulum membrane  icosanoid metabolic process  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  organelle membrane  oxidation-reduction process  
Ontology : EGO-EBImonooxygenase activity  iron ion binding  endoplasmic reticulum membrane  icosanoid metabolic process  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  organelle membrane  oxidation-reduction process  
NDEx NetworkCYP4F22
Atlas of Cancer Signalling NetworkCYP4F22
Wikipedia pathwaysCYP4F22
Orthology - Evolution
OrthoDB126410
GeneTree (enSembl)ENSG00000171954
Phylogenetic Trees/Animal Genes : TreeFamCYP4F22
HOVERGENQ6NT55
HOGENOMQ6NT55
Homologs : HomoloGeneCYP4F22
Homology/Alignments : Family Browser (UCSC)CYP4F22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP4F22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4F22
dbVarCYP4F22
ClinVarCYP4F22
1000_GenomesCYP4F22 
Exome Variant ServerCYP4F22
ExAC (Exome Aggregation Consortium)CYP4F22 (select the gene name)
Genetic variants : HAPMAP126410
Genomic Variants (DGV)CYP4F22 [DGVbeta]
DECIPHERCYP4F22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP4F22 
Mutations
ICGC Data PortalCYP4F22 
TCGA Data PortalCYP4F22 
Broad Tumor PortalCYP4F22
OASIS PortalCYP4F22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP4F22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP4F22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP4F22
DgiDB (Drug Gene Interaction Database)CYP4F22
DoCM (Curated mutations)CYP4F22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP4F22 (select a term)
intoGenCYP4F22
Cancer3DCYP4F22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611495   
Orphanet265   
MedgenCYP4F22
Genetic Testing Registry CYP4F22
NextProtQ6NT55 [Medical]
TSGene126410
GENETestsCYP4F22
Target ValidationCYP4F22
Huge Navigator CYP4F22 [HugePedia]
snp3D : Map Gene to Disease126410
BioCentury BCIQCYP4F22
ClinGenCYP4F22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126410
Chemical/Pharm GKB GenePA162383112
Clinical trialCYP4F22
Miscellaneous
canSAR (ICR)CYP4F22 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP4F22
EVEXCYP4F22
GoPubMedCYP4F22
iHOPCYP4F22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:45 CEST 2017

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