Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CYP4F30P (cytochrome P450 family 4 subfamily F member 30, pseudogene)

Identity

Alias_namesC2orf14
chromosome 2 open reading frame 14
cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene
Alias_symbol (synonym)DKFZp434F1719
4F-se9[6:7:8]
Other alias
HGNC (Hugo) CYP4F30P
LocusID (NCBI) 100132708
Atlas_Id 62264
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130681228 and ends at 130691689 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYP4F30P   25270
Cards
Entrez_Gene (NCBI)CYP4F30P  100132708  cytochrome P450 family 4 subfamily F member 30, pseudogene
AliasesC2orf14
GeneCards (Weizmann)CYP4F30P
Ensembl hg19 (Hinxton)ENSG00000214081 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214081 [Gene_View]  ENSG00000214081 [Sequence]  chr2:130681228-130691689 [Contig_View]  CYP4F30P [Vega]
ICGC DataPortalENSG00000214081
TCGA cBioPortalCYP4F30P
AceView (NCBI)CYP4F30P
Genatlas (Paris)CYP4F30P
WikiGenes100132708
SOURCE (Princeton)CYP4F30P
Genetics Home Reference (NIH)CYP4F30P
Genomic and cartography
GoldenPath hg38 (UCSC)CYP4F30P  -     chr2:130681228-130691689 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP4F30P  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblCYP4F30P - 2q21.1 [CytoView hg19]  CYP4F30P - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBICYP4F30P [Mapview hg19]  CYP4F30P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093281 AL136789 BC069809
RefSeq transcript (Entrez)NM_032248
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYP4F30P
Cluster EST : UnigeneHs.734862 [ NCBI ]
CGAP (NCI)Hs.734862
Alternative Splicing GalleryENSG00000214081
Gene ExpressionCYP4F30P [ NCBI-GEO ]   CYP4F30P [ EBI - ARRAY_EXPRESS ]   CYP4F30P [ SEEK ]   CYP4F30P [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4F30P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132708
GTEX Portal (Tissue expression)CYP4F30P
Human Protein AtlasENSG00000214081-CYP4F30P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0H9
Splice isoforms : SwissVarQ9H0H9
PhosPhoSitePlusQ9H0H9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CYP4F30P
DMDM Disease mutations100132708
Blocks (Seattle)CYP4F30P
SuperfamilyQ9H0H9
Human Protein Atlas [tissue]ENSG00000214081-CYP4F30P [tissue]
Peptide AtlasQ9H0H9
IPIIPI00031027   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0H9
IntAct (EBI)Q9H0H9
FunCoupENSG00000214081
BioGRIDCYP4F30P
STRING (EMBL)CYP4F30P
ZODIACCYP4F30P
Ontologies - Pathways
QuickGOQ9H0H9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCYP4F30P
Atlas of Cancer Signalling NetworkCYP4F30P
Wikipedia pathwaysCYP4F30P
Orthology - Evolution
OrthoDB100132708
GeneTree (enSembl)ENSG00000214081
Phylogenetic Trees/Animal Genes : TreeFamCYP4F30P
HOVERGENQ9H0H9
HOGENOMQ9H0H9
Homologs : HomoloGeneCYP4F30P
Homology/Alignments : Family Browser (UCSC)CYP4F30P
Gene fusions - Rearrangements
Fusion : QuiverCYP4F30P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP4F30P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4F30P
dbVarCYP4F30P
ClinVarCYP4F30P
1000_GenomesCYP4F30P 
Exome Variant ServerCYP4F30P
ExAC (Exome Aggregation Consortium)ENSG00000214081
GNOMAD BrowserENSG00000214081
Varsome BrowserCYP4F30P
Genetic variants : HAPMAP100132708
Genomic Variants (DGV)CYP4F30P [DGVbeta]
DECIPHERCYP4F30P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP4F30P 
Mutations
ICGC Data PortalCYP4F30P 
TCGA Data PortalCYP4F30P 
Broad Tumor PortalCYP4F30P
OASIS PortalCYP4F30P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCYP4F30P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP4F30P
DgiDB (Drug Gene Interaction Database)CYP4F30P
DoCM (Curated mutations)CYP4F30P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP4F30P (select a term)
intoGenCYP4F30P
Cancer3DCYP4F30P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCYP4F30P
MedgenCYP4F30P
Genetic Testing Registry CYP4F30P
NextProtQ9H0H9 [Medical]
TSGene100132708
GENETestsCYP4F30P
Target ValidationCYP4F30P
Huge Navigator CYP4F30P [HugePedia]
snp3D : Map Gene to Disease100132708
BioCentury BCIQCYP4F30P
ClinGenCYP4F30P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132708
Chemical/Pharm GKB GenePA134931591
Clinical trialCYP4F30P
Miscellaneous
canSAR (ICR)CYP4F30P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP4F30P
EVEXCYP4F30P
GoPubMedCYP4F30P
iHOPCYP4F30P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:42:00 CEST 2018
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