Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CYP4X1 (cytochrome P450, family 4, subfamily X, polypeptide 1)

Identity

Alias_namescytochrome P450, family 4, subfamily X, polypeptide 1
Alias_symbol (synonym)MGC40051
Other aliasCYPIVX1
HGNC (Hugo) CYP4X1
LocusID (NCBI) 260293
Atlas_Id 62268
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47489240 and ends at 47516423 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CYP4X1 (1p33) / CYP4X1 (1p33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP4X1   20244
Cards
Entrez_Gene (NCBI)CYP4X1  260293  cytochrome P450, family 4, subfamily X, polypeptide 1
AliasesCYPIVX1
GeneCards (Weizmann)CYP4X1
Ensembl hg19 (Hinxton)ENSG00000186377 [Gene_View]  chr1:47489240-47516423 [Contig_View]  CYP4X1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186377 [Gene_View]  chr1:47489240-47516423 [Contig_View]  CYP4X1 [Vega]
ICGC DataPortalENSG00000186377
TCGA cBioPortalCYP4X1
AceView (NCBI)CYP4X1
Genatlas (Paris)CYP4X1
WikiGenes260293
SOURCE (Princeton)CYP4X1
Genetics Home Reference (NIH)CYP4X1
Genomic and cartography
GoldenPath hg19 (UCSC)CYP4X1  -     chr1:47489240-47516423 +  1p33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYP4X1  -     1p33   [Description]    (hg38-Dec_2013)
EnsemblCYP4X1 - 1p33 [CytoView hg19]  CYP4X1 - 1p33 [CytoView hg38]
Mapping of homologs : NCBICYP4X1 [Mapview hg19]  CYP4X1 [Mapview hg38]
OMIM614999   
Gene and transcription
Genbank (Entrez)AK091806 AK098065 AK131355 AM040940 AY358537
RefSeq transcript (Entrez)NM_178033
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_007966 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CYP4X1
Cluster EST : UnigeneHs.439760 [ NCBI ]
CGAP (NCI)Hs.439760
Alternative Splicing GalleryENSG00000186377
Gene ExpressionCYP4X1 [ NCBI-GEO ]   CYP4X1 [ EBI - ARRAY_EXPRESS ]   CYP4X1 [ SEEK ]   CYP4X1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4X1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)260293
GTEX Portal (Tissue expression)CYP4X1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N118   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N118  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N118
Splice isoforms : SwissVarQ8N118
Catalytic activity : Enzyme1.14.14.1 [ Enzyme-Expasy ]   1.14.14.11.14.14.1 [ IntEnz-EBI ]   1.14.14.1 [ BRENDA ]   1.14.14.1 [ KEGG ]   
PhosPhoSitePlusQ8N118
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP4X1
DMDM Disease mutations260293
Blocks (Seattle)CYP4X1
SuperfamilyQ8N118
Human Protein AtlasENSG00000186377
Peptide AtlasQ8N118
HPRD13110
IPIIPI00166042   IPI01010359   
Protein Interaction databases
DIP (DOE-UCLA)Q8N118
IntAct (EBI)Q8N118
FunCoupENSG00000186377
BioGRIDCYP4X1
STRING (EMBL)CYP4X1
ZODIACCYP4X1
Ontologies - Pathways
QuickGOQ8N118
Ontology : AmiGOiron ion binding  endoplasmic reticulum membrane  integral component of membrane  heme binding  oxidation-reduction process  aromatase activity  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum membrane  integral component of membrane  heme binding  oxidation-reduction process  aromatase activity  
Pathways : KEGGSerotonergic synapse   
NDEx NetworkCYP4X1
Atlas of Cancer Signalling NetworkCYP4X1
Wikipedia pathwaysCYP4X1
Orthology - Evolution
OrthoDB260293
GeneTree (enSembl)ENSG00000186377
Phylogenetic Trees/Animal Genes : TreeFamCYP4X1
HOVERGENQ8N118
HOGENOMQ8N118
Homologs : HomoloGeneCYP4X1
Homology/Alignments : Family Browser (UCSC)CYP4X1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP4X1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4X1
dbVarCYP4X1
ClinVarCYP4X1
1000_GenomesCYP4X1 
Exome Variant ServerCYP4X1
ExAC (Exome Aggregation Consortium)CYP4X1 (select the gene name)
Genetic variants : HAPMAP260293
Genomic Variants (DGV)CYP4X1 [DGVbeta]
DECIPHER (Syndromes)1:47489240-47516423  ENSG00000186377
CONAN: Copy Number AnalysisCYP4X1 
Mutations
ICGC Data PortalCYP4X1 
TCGA Data PortalCYP4X1 
Broad Tumor PortalCYP4X1
OASIS PortalCYP4X1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP4X1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYP4X1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP4X1
DgiDB (Drug Gene Interaction Database)CYP4X1
DoCM (Curated mutations)CYP4X1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP4X1 (select a term)
intoGenCYP4X1
Cancer3DCYP4X1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614999   
Orphanet
MedgenCYP4X1
Genetic Testing Registry CYP4X1
NextProtQ8N118 [Medical]
TSGene260293
GENETestsCYP4X1
Huge Navigator CYP4X1 [HugePedia]
snp3D : Map Gene to Disease260293
BioCentury BCIQCYP4X1
ClinGenCYP4X1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD260293
Chemical/Pharm GKB GenePA134933184
Clinical trialCYP4X1
Miscellaneous
canSAR (ICR)CYP4X1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP4X1
EVEXCYP4X1
GoPubMedCYP4X1
iHOPCYP4X1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:56 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.