Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYP4X1 (cytochrome P450 family 4 subfamily X member 1)

Identity

Alias (NCBI)CYPIVX1
HGNC (Hugo) CYP4X1
HGNC Alias symbMGC40051
HGNC Previous namecytochrome P450, family 4, subfamily X, polypeptide 1
LocusID (NCBI) 260293
Atlas_Id 62268
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47023669 and ends at 47050751 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CYP4X1 (1p33) / CYP4X1 (1p33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CYP4X1   20244
Cards
Entrez_Gene (NCBI)CYP4X1    cytochrome P450 family 4 subfamily X member 1
AliasesCYPIVX1
GeneCards (Weizmann)CYP4X1
Ensembl hg19 (Hinxton)ENSG00000186377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186377 [Gene_View]  ENSG00000186377 [Sequence]  chr1:47023669-47050751 [Contig_View]  CYP4X1 [Vega]
ICGC DataPortalENSG00000186377
TCGA cBioPortalCYP4X1
AceView (NCBI)CYP4X1
Genatlas (Paris)CYP4X1
SOURCE (Princeton)CYP4X1
Genetics Home Reference (NIH)CYP4X1
Genomic and cartography
GoldenPath hg38 (UCSC)CYP4X1  -     chr1:47023669-47050751 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP4X1  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathCYP4X1 - 1p33 [CytoView hg19]  CYP4X1 - 1p33 [CytoView hg38]
ImmunoBaseENSG00000186377
Genome Data Viewer NCBICYP4X1 [Mapview hg19]  
OMIM614999   
Gene and transcription
Genbank (Entrez)AI923200 AK091806 AK098065 AK131355 AM040940
RefSeq transcript (Entrez)NM_001320289 NM_001320290 NM_178033
Consensus coding sequences : CCDS (NCBI)CYP4X1
Gene ExpressionCYP4X1 [ NCBI-GEO ]   CYP4X1 [ EBI - ARRAY_EXPRESS ]   CYP4X1 [ SEEK ]   CYP4X1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4X1 [ Firebrowse - Broad ]
GenevisibleExpression of CYP4X1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)260293
GTEX Portal (Tissue expression)CYP4X1
Human Protein AtlasENSG00000186377-CYP4X1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N118   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N118  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N118
PhosPhoSitePlusQ8N118
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I    Cyt_P450_sf   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP4X1
SuperfamilyQ8N118
AlphaFold pdb e-kbQ8N118   
Human Protein Atlas [tissue]ENSG00000186377-CYP4X1 [tissue]
HPRD13110
Protein Interaction databases
DIP (DOE-UCLA)Q8N118
IntAct (EBI)Q8N118
BioGRIDCYP4X1
STRING (EMBL)CYP4X1
ZODIACCYP4X1
Ontologies - Pathways
QuickGOQ8N118
Ontology : AmiGOiron ion binding  endoplasmic reticulum membrane  integral component of membrane  heme binding  anandamide 14,15 epoxidase activity  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum membrane  integral component of membrane  heme binding  anandamide 14,15 epoxidase activity  
NDEx NetworkCYP4X1
Atlas of Cancer Signalling NetworkCYP4X1
Wikipedia pathwaysCYP4X1
Orthology - Evolution
OrthoDB260293
GeneTree (enSembl)ENSG00000186377
Phylogenetic Trees/Animal Genes : TreeFamCYP4X1
Homologs : HomoloGeneCYP4X1
Homology/Alignments : Family Browser (UCSC)CYP4X1
Gene fusions - Rearrangements
Fusion : QuiverCYP4X1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP4X1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4X1
dbVarCYP4X1
ClinVarCYP4X1
MonarchCYP4X1
1000_GenomesCYP4X1 
Exome Variant ServerCYP4X1
GNOMAD BrowserENSG00000186377
Varsome BrowserCYP4X1
ACMGCYP4X1 variants
VarityQ8N118
Genomic Variants (DGV)CYP4X1 [DGVbeta]
DECIPHERCYP4X1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP4X1 
Mutations
ICGC Data PortalCYP4X1 
TCGA Data PortalCYP4X1 
Broad Tumor PortalCYP4X1
OASIS PortalCYP4X1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP4X1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCYP4X1
Mutations and Diseases : HGMDCYP4X1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCYP4X1
DgiDB (Drug Gene Interaction Database)CYP4X1
DoCM (Curated mutations)CYP4X1
CIViC (Clinical Interpretations of Variants in Cancer)CYP4X1
Cancer3DCYP4X1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614999   
Orphanet
DisGeNETCYP4X1
MedgenCYP4X1
Genetic Testing Registry CYP4X1
NextProtQ8N118 [Medical]
GENETestsCYP4X1
Target ValidationCYP4X1
Huge Navigator CYP4X1 [HugePedia]
ClinGenCYP4X1
Clinical trials, drugs, therapy
MyCancerGenomeCYP4X1
Protein Interactions : CTDCYP4X1
Pharm GKB GenePA134933184
PharosQ8N118
Clinical trialCYP4X1
Miscellaneous
canSAR (ICR)CYP4X1
HarmonizomeCYP4X1
DataMed IndexCYP4X1
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCYP4X1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:47:18 CEST 2021

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