Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CYP4Z2P (cytochrome P450 family 4 subfamily Z member 2, pseudogene)

Identity

Alias_namescytochrome P450
Alias_symbol (synonym)FLJ40054
Other alias-
HGNC (Hugo) CYP4Z2P
LocusID (NCBI) 163720
Atlas_Id 55358
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46843095 and ends at 46900475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP4Z2P   24426
Cards
Entrez_Gene (NCBI)CYP4Z2P  163720  cytochrome P450 family 4 subfamily Z member 2, pseudogene
Aliases
GeneCards (Weizmann)CYP4Z2P
Ensembl hg19 (Hinxton)ENSG00000154198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154198 [Gene_View]  ENSG00000154198 [Sequence]  chr1:46843095-46900475 [Contig_View]  CYP4Z2P [Vega]
ICGC DataPortalENSG00000154198
TCGA cBioPortalCYP4Z2P
AceView (NCBI)CYP4Z2P
Genatlas (Paris)CYP4Z2P
WikiGenes163720
SOURCE (Princeton)CYP4Z2P
Genetics Home Reference (NIH)CYP4Z2P
Genomic and cartography
GoldenPath hg38 (UCSC)CYP4Z2P  -     chr1:46843095-46900475 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYP4Z2P  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblCYP4Z2P - 1p33 [CytoView hg19]  CYP4Z2P - 1p33 [CytoView hg38]
Mapping of homologs : NCBICYP4Z2P [Mapview hg19]  CYP4Z2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097373 AY262057 AY696295 DA998990
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYP4Z2P
Cluster EST : UnigeneHs.591431 [ NCBI ]
CGAP (NCI)Hs.591431
Alternative Splicing GalleryENSG00000154198
Gene ExpressionCYP4Z2P [ NCBI-GEO ]   CYP4Z2P [ EBI - ARRAY_EXPRESS ]   CYP4Z2P [ SEEK ]   CYP4Z2P [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4Z2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163720
GTEX Portal (Tissue expression)CYP4Z2P
Human Protein AtlasENSG00000154198-CYP4Z2P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1L4
Splice isoforms : SwissVarQ8N1L4
PhosPhoSitePlusQ8N1L4
Domains : Interpro (EBI)Cyt_P450   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
Conserved Domain (NCBI)CYP4Z2P
DMDM Disease mutations163720
Blocks (Seattle)CYP4Z2P
SuperfamilyQ8N1L4
Human Protein Atlas [tissue]ENSG00000154198-CYP4Z2P [tissue]
Peptide AtlasQ8N1L4
IPIIPI00295854   IPI00890692   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1L4
IntAct (EBI)Q8N1L4
FunCoupENSG00000154198
BioGRIDCYP4Z2P
STRING (EMBL)CYP4Z2P
ZODIACCYP4Z2P
Ontologies - Pathways
QuickGOQ8N1L4
Ontology : AmiGOiron ion binding  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  heme binding  oxidation-reduction process  
NDEx NetworkCYP4Z2P
Atlas of Cancer Signalling NetworkCYP4Z2P
Wikipedia pathwaysCYP4Z2P
Orthology - Evolution
OrthoDB163720
GeneTree (enSembl)ENSG00000154198
Phylogenetic Trees/Animal Genes : TreeFamCYP4Z2P
HOVERGENQ8N1L4
HOGENOMQ8N1L4
Homologs : HomoloGeneCYP4Z2P
Homology/Alignments : Family Browser (UCSC)CYP4Z2P
Gene fusions - Rearrangements
Fusion : QuiverCYP4Z2P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYP4Z2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4Z2P
dbVarCYP4Z2P
ClinVarCYP4Z2P
1000_GenomesCYP4Z2P 
Exome Variant ServerCYP4Z2P
ExAC (Exome Aggregation Consortium)ENSG00000154198
GNOMAD BrowserENSG00000154198
Genetic variants : HAPMAP163720
Genomic Variants (DGV)CYP4Z2P [DGVbeta]
DECIPHERCYP4Z2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYP4Z2P 
Mutations
ICGC Data PortalCYP4Z2P 
TCGA Data PortalCYP4Z2P 
Broad Tumor PortalCYP4Z2P
OASIS PortalCYP4Z2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCYP4Z2P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP4Z2P
DgiDB (Drug Gene Interaction Database)CYP4Z2P
DoCM (Curated mutations)CYP4Z2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP4Z2P (select a term)
intoGenCYP4Z2P
Cancer3DCYP4Z2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCYP4Z2P
MedgenCYP4Z2P
Genetic Testing Registry CYP4Z2P
NextProtQ8N1L4 [Medical]
TSGene163720
GENETestsCYP4Z2P
Target ValidationCYP4Z2P
Huge Navigator CYP4Z2P [HugePedia]
snp3D : Map Gene to Disease163720
BioCentury BCIQCYP4Z2P
ClinGenCYP4Z2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163720
Clinical trialCYP4Z2P
Miscellaneous
canSAR (ICR)CYP4Z2P (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP4Z2P
EVEXCYP4Z2P
GoPubMedCYP4Z2P
iHOPCYP4Z2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:21:49 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.