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CYS1 (cystin 1)

Identity

Other alias-
HGNC (Hugo) CYS1
LocusID (NCBI) 192668
Atlas_Id 62273
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 10056799 and ends at 10080411 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYS1   18525
Cards
Entrez_Gene (NCBI)CYS1  192668  cystin 1
Aliases
GeneCards (Weizmann)CYS1
Ensembl hg19 (Hinxton)ENSG00000205795 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205795 [Gene_View]  chr2:10056799-10080411 [Contig_View]  CYS1 [Vega]
ICGC DataPortalENSG00000205795
TCGA cBioPortalCYS1
AceView (NCBI)CYS1
Genatlas (Paris)CYS1
WikiGenes192668
SOURCE (Princeton)CYS1
Genetics Home Reference (NIH)CYS1
Genomic and cartography
GoldenPath hg38 (UCSC)CYS1  -     chr2:10056799-10080411 -  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYS1  -     2p25.1   [Description]    (hg19-Feb_2009)
EnsemblCYS1 - 2p25.1 [CytoView hg19]  CYS1 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBICYS1 [Mapview hg19]  CYS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF544983 AK091299 AW298291 BC148588 BC156921
RefSeq transcript (Entrez)NM_001037160
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYS1
Cluster EST : UnigeneHs.720471 [ NCBI ]
CGAP (NCI)Hs.720471
Alternative Splicing GalleryENSG00000205795
Gene ExpressionCYS1 [ NCBI-GEO ]   CYS1 [ EBI - ARRAY_EXPRESS ]   CYS1 [ SEEK ]   CYS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)192668
GTEX Portal (Tissue expression)CYS1
Human Protein AtlasENSG00000205795-CYS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ717R9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ717R9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ717R9
Splice isoforms : SwissVarQ717R9
PhosPhoSitePlusQ717R9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CYS1
DMDM Disease mutations192668
Blocks (Seattle)CYS1
SuperfamilyQ717R9
Human Protein Atlas [tissue]ENSG00000205795-CYS1 [tissue]
Peptide AtlasQ717R9
HPRD18744
IPIIPI00429036   
Protein Interaction databases
DIP (DOE-UCLA)Q717R9
IntAct (EBI)Q717R9
FunCoupENSG00000205795
BioGRIDCYS1
STRING (EMBL)CYS1
ZODIACCYS1
Ontologies - Pathways
QuickGOQ717R9
Ontology : AmiGOprotein binding  cytosol  cytoskeleton  cilium  ciliary membrane  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytosol  cytoskeleton  cilium  ciliary membrane  extracellular exosome  
NDEx NetworkCYS1
Atlas of Cancer Signalling NetworkCYS1
Wikipedia pathwaysCYS1
Orthology - Evolution
OrthoDB192668
GeneTree (enSembl)ENSG00000205795
Phylogenetic Trees/Animal Genes : TreeFamCYS1
HOVERGENQ717R9
HOGENOMQ717R9
Homologs : HomoloGeneCYS1
Homology/Alignments : Family Browser (UCSC)CYS1
Gene fusions - Rearrangements
Tumor Fusion PortalCYS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYS1
dbVarCYS1
ClinVarCYS1
1000_GenomesCYS1 
Exome Variant ServerCYS1
ExAC (Exome Aggregation Consortium)ENSG00000205795
GNOMAD BrowserENSG00000205795
Genetic variants : HAPMAP192668
Genomic Variants (DGV)CYS1 [DGVbeta]
DECIPHERCYS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYS1 
Mutations
ICGC Data PortalCYS1 
TCGA Data PortalCYS1 
Broad Tumor PortalCYS1
OASIS PortalCYS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYS1
DgiDB (Drug Gene Interaction Database)CYS1
DoCM (Curated mutations)CYS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYS1 (select a term)
intoGenCYS1
Cancer3DCYS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCYS1
MedgenCYS1
Genetic Testing Registry CYS1
NextProtQ717R9 [Medical]
TSGene192668
GENETestsCYS1
Target ValidationCYS1
Huge Navigator CYS1 [HugePedia]
snp3D : Map Gene to Disease192668
BioCentury BCIQCYS1
ClinGenCYS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD192668
Chemical/Pharm GKB GenePA38343
Clinical trialCYS1
Miscellaneous
canSAR (ICR)CYS1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYS1
EVEXCYS1
GoPubMedCYS1
iHOPCYS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:25:40 CET 2017

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