Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYSRT1 (cysteine rich tail 1)

Identity

Alias_namesC9orf169
chromosome 9 open reading frame 169
Alias_symbol (synonym)MGC59937
Other alias
HGNC (Hugo) CYSRT1
LocusID (NCBI) 375791
Atlas_Id 62274
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137224635 and ends at 137226311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYSRT1   30529
Cards
Entrez_Gene (NCBI)CYSRT1  375791  cysteine rich tail 1
AliasesC9orf169
GeneCards (Weizmann)CYSRT1
Ensembl hg19 (Hinxton)ENSG00000197191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197191 [Gene_View]  chr9:137224635-137226311 [Contig_View]  CYSRT1 [Vega]
ICGC DataPortalENSG00000197191
TCGA cBioPortalCYSRT1
AceView (NCBI)CYSRT1
Genatlas (Paris)CYSRT1
WikiGenes375791
SOURCE (Princeton)CYSRT1
Genetics Home Reference (NIH)CYSRT1
Genomic and cartography
GoldenPath hg38 (UCSC)CYSRT1  -     chr9:137224635-137226311 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYSRT1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblCYSRT1 - 9q34.3 [CytoView hg19]  CYSRT1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBICYSRT1 [Mapview hg19]  CYSRT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC018787 BC052297 BE563091
RefSeq transcript (Entrez)NM_199001
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYSRT1
Cluster EST : UnigeneHs.512469 [ NCBI ]
CGAP (NCI)Hs.512469
Alternative Splicing GalleryENSG00000197191
Gene ExpressionCYSRT1 [ NCBI-GEO ]   CYSRT1 [ EBI - ARRAY_EXPRESS ]   CYSRT1 [ SEEK ]   CYSRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYSRT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375791
GTEX Portal (Tissue expression)CYSRT1
Human Protein AtlasENSG00000197191-CYSRT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MQ03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MQ03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MQ03
Splice isoforms : SwissVarA8MQ03
PhosPhoSitePlusA8MQ03
Domains : Interpro (EBI)UPF0574   
Domain families : Pfam (Sanger)DUF2477 (PF10631)   
Domain families : Pfam (NCBI)pfam10631   
Conserved Domain (NCBI)CYSRT1
DMDM Disease mutations375791
Blocks (Seattle)CYSRT1
SuperfamilyA8MQ03
Human Protein Atlas [tissue]ENSG00000197191-CYSRT1 [tissue]
Peptide AtlasA8MQ03
HPRD14696
IPIIPI00783904   
Protein Interaction databases
DIP (DOE-UCLA)A8MQ03
IntAct (EBI)A8MQ03
FunCoupENSG00000197191
BioGRIDCYSRT1
STRING (EMBL)CYSRT1
ZODIACCYSRT1
Ontologies - Pathways
QuickGOA8MQ03
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkCYSRT1
Atlas of Cancer Signalling NetworkCYSRT1
Wikipedia pathwaysCYSRT1
Orthology - Evolution
OrthoDB375791
GeneTree (enSembl)ENSG00000197191
Phylogenetic Trees/Animal Genes : TreeFamCYSRT1
HOVERGENA8MQ03
HOGENOMA8MQ03
Homologs : HomoloGeneCYSRT1
Homology/Alignments : Family Browser (UCSC)CYSRT1
Gene fusions - Rearrangements
Tumor Fusion PortalCYSRT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYSRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYSRT1
dbVarCYSRT1
ClinVarCYSRT1
1000_GenomesCYSRT1 
Exome Variant ServerCYSRT1
ExAC (Exome Aggregation Consortium)ENSG00000197191
GNOMAD BrowserENSG00000197191
Genetic variants : HAPMAP375791
Genomic Variants (DGV)CYSRT1 [DGVbeta]
DECIPHERCYSRT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYSRT1 
Mutations
ICGC Data PortalCYSRT1 
TCGA Data PortalCYSRT1 
Broad Tumor PortalCYSRT1
OASIS PortalCYSRT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCYSRT1
BioMutasearch CYSRT1
DgiDB (Drug Gene Interaction Database)CYSRT1
DoCM (Curated mutations)CYSRT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYSRT1 (select a term)
intoGenCYSRT1
Cancer3DCYSRT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCYSRT1
MedgenCYSRT1
Genetic Testing Registry CYSRT1
NextProtA8MQ03 [Medical]
TSGene375791
GENETestsCYSRT1
Target ValidationCYSRT1
Huge Navigator CYSRT1 [HugePedia]
snp3D : Map Gene to Disease375791
BioCentury BCIQCYSRT1
ClinGenCYSRT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375791
Chemical/Pharm GKB GenePA162380848
Clinical trialCYSRT1
Miscellaneous
canSAR (ICR)CYSRT1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYSRT1
EVEXCYSRT1
GoPubMedCYSRT1
iHOPCYSRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:25:41 CET 2017

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