Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYTIP (cytohesin 1 interacting protein)

Identity

Alias_namesPSCDBP
pleckstrin homology
Alias_symbol (synonym)B3-1
HE
CYBR
CASP
CYTHIP
Other alias
HGNC (Hugo) CYTIP
LocusID (NCBI) 9595
Atlas_Id 53225
Location 2q24.1  [Link to chromosome band 2q24]
Location_base_pair Starts at 157414619 and ends at 157444092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CYTIP (2q24.1) / MGAT5 (2q21.2)LRPPRC (2p21) / CYTIP (2q24.1)CYTIP 2q24.1 / MGAT5 2q21.2
LRPPRC 2p21 / CYTIP 2q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYTIP   9506
Cards
Entrez_Gene (NCBI)CYTIP  9595  cytohesin 1 interacting protein
AliasesB3-1; CASP; CYBR; CYTHIP; 
HE; PSCDBP
GeneCards (Weizmann)CYTIP
Ensembl hg19 (Hinxton)ENSG00000115165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115165 [Gene_View]  chr2:157414619-157444092 [Contig_View]  CYTIP [Vega]
ICGC DataPortalENSG00000115165
TCGA cBioPortalCYTIP
AceView (NCBI)CYTIP
Genatlas (Paris)CYTIP
WikiGenes9595
SOURCE (Princeton)CYTIP
Genetics Home Reference (NIH)CYTIP
Genomic and cartography
GoldenPath hg38 (UCSC)CYTIP  -     chr2:157414619-157444092 -  2q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYTIP  -     2q24.1   [Description]    (hg19-Feb_2009)
EnsemblCYTIP - 2q24.1 [CytoView hg19]  CYTIP - 2q24.1 [CytoView hg38]
Mapping of homologs : NCBICYTIP [Mapview hg19]  CYTIP [Mapview hg38]
OMIM604448   
Gene and transcription
Genbank (Entrez)AF068836 AK301544 AK312753 BC036449 CD642163
RefSeq transcript (Entrez)NM_004288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYTIP
Cluster EST : UnigeneHs.270 [ NCBI ]
CGAP (NCI)Hs.270
Alternative Splicing GalleryENSG00000115165
Gene ExpressionCYTIP [ NCBI-GEO ]   CYTIP [ EBI - ARRAY_EXPRESS ]   CYTIP [ SEEK ]   CYTIP [ MEM ]
Gene Expression Viewer (FireBrowse)CYTIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9595
GTEX Portal (Tissue expression)CYTIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60759   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60759  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60759
Splice isoforms : SwissVarO60759
PhosPhoSitePlusO60759
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)CYTIP
DMDM Disease mutations9595
Blocks (Seattle)CYTIP
PDB (SRS)2Z17   
PDB (PDBSum)2Z17   
PDB (IMB)2Z17   
PDB (RSDB)2Z17   
Structural Biology KnowledgeBase2Z17   
SCOP (Structural Classification of Proteins)2Z17   
CATH (Classification of proteins structures)2Z17   
SuperfamilyO60759
Human Protein AtlasENSG00000115165
Peptide AtlasO60759
HPRD09192
IPIIPI00003591   IPI00926251   IPI00917617   IPI00915858   IPI00916284   
Protein Interaction databases
DIP (DOE-UCLA)O60759
IntAct (EBI)O60759
FunCoupENSG00000115165
BioGRIDCYTIP
STRING (EMBL)CYTIP
ZODIACCYTIP
Ontologies - Pathways
QuickGOO60759
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  early endosome  cytosol  cell cortex  regulation of cell adhesion  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  early endosome  cytosol  cell cortex  regulation of cell adhesion  
NDEx NetworkCYTIP
Atlas of Cancer Signalling NetworkCYTIP
Wikipedia pathwaysCYTIP
Orthology - Evolution
OrthoDB9595
GeneTree (enSembl)ENSG00000115165
Phylogenetic Trees/Animal Genes : TreeFamCYTIP
HOVERGENO60759
HOGENOMO60759
Homologs : HomoloGeneCYTIP
Homology/Alignments : Family Browser (UCSC)CYTIP
Gene fusions - Rearrangements
Fusion : MitelmanCYTIP/MGAT5 [2q24.1/2q21.2]  
Fusion : MitelmanLRPPRC/CYTIP [2p21/2q24.1]  [t(2;2)(p21;q24)]  
Fusion: TCGACYTIP 2q24.1 MGAT5 2q21.2 LUSC
Fusion: TCGALRPPRC 2p21 CYTIP 2q24.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYTIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYTIP
dbVarCYTIP
ClinVarCYTIP
1000_GenomesCYTIP 
Exome Variant ServerCYTIP
ExAC (Exome Aggregation Consortium)CYTIP (select the gene name)
Genetic variants : HAPMAP9595
Genomic Variants (DGV)CYTIP [DGVbeta]
DECIPHERCYTIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYTIP 
Mutations
ICGC Data PortalCYTIP 
TCGA Data PortalCYTIP 
Broad Tumor PortalCYTIP
OASIS PortalCYTIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYTIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYTIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYTIP
DgiDB (Drug Gene Interaction Database)CYTIP
DoCM (Curated mutations)CYTIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYTIP (select a term)
intoGenCYTIP
Cancer3DCYTIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604448   
Orphanet
MedgenCYTIP
Genetic Testing Registry CYTIP
NextProtO60759 [Medical]
TSGene9595
GENETestsCYTIP
Target ValidationCYTIP
Huge Navigator CYTIP [HugePedia]
snp3D : Map Gene to Disease9595
BioCentury BCIQCYTIP
ClinGenCYTIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9595
Chemical/Pharm GKB GenePA164718652
Clinical trialCYTIP
Miscellaneous
canSAR (ICR)CYTIP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYTIP
EVEXCYTIP
GoPubMedCYTIP
iHOPCYTIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:51:14 CEST 2017

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