Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYTL1 (cytokine like 1)

Identity

Alias_namescytokine-like 1
Alias_symbol (synonym)C17
C4orf4
Other alias
HGNC (Hugo) CYTL1
LocusID (NCBI) 54360
Atlas_Id 52721
Location 4p16.2  [Link to chromosome band 4p16]
Location_base_pair Starts at 5014586 and ends at 5019470 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYTL1   24435
Cards
Entrez_Gene (NCBI)CYTL1  54360  cytokine like 1
AliasesC17; C4orf4
GeneCards (Weizmann)CYTL1
Ensembl hg19 (Hinxton)ENSG00000170891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170891 [Gene_View]  chr4:5014586-5019470 [Contig_View]  CYTL1 [Vega]
ICGC DataPortalENSG00000170891
TCGA cBioPortalCYTL1
AceView (NCBI)CYTL1
Genatlas (Paris)CYTL1
WikiGenes54360
SOURCE (Princeton)CYTL1
Genetics Home Reference (NIH)CYTL1
Genomic and cartography
GoldenPath hg38 (UCSC)CYTL1  -     chr4:5014586-5019470 -  4p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYTL1  -     4p16.2   [Description]    (hg19-Feb_2009)
EnsemblCYTL1 - 4p16.2 [CytoView hg19]  CYTL1 - 4p16.2 [CytoView hg38]
Mapping of homologs : NCBICYTL1 [Mapview hg19]  CYTL1 [Mapview hg38]
OMIM607930   
Gene and transcription
Genbank (Entrez)AF193766 AF274956 AY359101 BC031391 DQ890790
RefSeq transcript (Entrez)NM_018659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYTL1
Cluster EST : UnigeneHs.13872 [ NCBI ]
CGAP (NCI)Hs.13872
Alternative Splicing GalleryENSG00000170891
Gene ExpressionCYTL1 [ NCBI-GEO ]   CYTL1 [ EBI - ARRAY_EXPRESS ]   CYTL1 [ SEEK ]   CYTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54360
GTEX Portal (Tissue expression)CYTL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRR1
Splice isoforms : SwissVarQ9NRR1
PhosPhoSitePlusQ9NRR1
Domains : Interpro (EBI)CYTL1   
Domain families : Pfam (Sanger)CYTL1 (PF15153)   
Domain families : Pfam (NCBI)pfam15153   
Conserved Domain (NCBI)CYTL1
DMDM Disease mutations54360
Blocks (Seattle)CYTL1
SuperfamilyQ9NRR1
Human Protein AtlasENSG00000170891
Peptide AtlasQ9NRR1
HPRD16260
IPIIPI00032876   IPI00382463   IPI00965681   IPI00966504   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRR1
IntAct (EBI)Q9NRR1
FunCoupENSG00000170891
BioGRIDCYTL1
STRING (EMBL)CYTL1
ZODIACCYTL1
Ontologies - Pathways
QuickGOQ9NRR1
Ontology : AmiGOchondrocyte differentiation  receptor binding  extracellular space  signal transduction  positive regulation of transcription from RNA polymerase II promoter  inner ear development  chondroitin sulfate proteoglycan biosynthetic process  positive regulation of sequence-specific DNA binding transcription factor activity  cartilage homeostasis  
Ontology : EGO-EBIchondrocyte differentiation  receptor binding  extracellular space  signal transduction  positive regulation of transcription from RNA polymerase II promoter  inner ear development  chondroitin sulfate proteoglycan biosynthetic process  positive regulation of sequence-specific DNA binding transcription factor activity  cartilage homeostasis  
NDEx NetworkCYTL1
Atlas of Cancer Signalling NetworkCYTL1
Wikipedia pathwaysCYTL1
Orthology - Evolution
OrthoDB54360
GeneTree (enSembl)ENSG00000170891
Phylogenetic Trees/Animal Genes : TreeFamCYTL1
HOVERGENQ9NRR1
HOGENOMQ9NRR1
Homologs : HomoloGeneCYTL1
Homology/Alignments : Family Browser (UCSC)CYTL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYTL1
dbVarCYTL1
ClinVarCYTL1
1000_GenomesCYTL1 
Exome Variant ServerCYTL1
ExAC (Exome Aggregation Consortium)CYTL1 (select the gene name)
Genetic variants : HAPMAP54360
Genomic Variants (DGV)CYTL1 [DGVbeta]
DECIPHERCYTL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYTL1 
Mutations
ICGC Data PortalCYTL1 
TCGA Data PortalCYTL1 
Broad Tumor PortalCYTL1
OASIS PortalCYTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYTL1
DgiDB (Drug Gene Interaction Database)CYTL1
DoCM (Curated mutations)CYTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYTL1 (select a term)
intoGenCYTL1
Cancer3DCYTL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607930   
Orphanet
MedgenCYTL1
Genetic Testing Registry CYTL1
NextProtQ9NRR1 [Medical]
TSGene54360
GENETestsCYTL1
Target ValidationCYTL1
Huge Navigator CYTL1 [HugePedia]
snp3D : Map Gene to Disease54360
BioCentury BCIQCYTL1
ClinGenCYTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54360
Chemical/Pharm GKB GenePA134978681
Clinical trialCYTL1
Miscellaneous
canSAR (ICR)CYTL1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYTL1
EVEXCYTL1
GoPubMedCYTL1
iHOPCYTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:40 CEST 2017

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