Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYYR1 (cysteine and tyrosine rich 1)

Identity

Alias_namesC21orf95
cysteine/tyrosine-rich 1
Other alias
HGNC (Hugo) CYYR1
LocusID (NCBI) 116159
Atlas_Id 47649
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 26466209 and ends at 26573404 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APP (21q21.3) / CYYR1 (21q21.3)BCR (22q11.23) / CYYR1 (21q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYYR1   16274
Cards
Entrez_Gene (NCBI)CYYR1  116159  cysteine and tyrosine rich 1
AliasesC21orf95
GeneCards (Weizmann)CYYR1
Ensembl hg19 (Hinxton)ENSG00000166265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166265 [Gene_View]  chr21:26466209-26573404 [Contig_View]  CYYR1 [Vega]
ICGC DataPortalENSG00000166265
TCGA cBioPortalCYYR1
AceView (NCBI)CYYR1
Genatlas (Paris)CYYR1
WikiGenes116159
SOURCE (Princeton)CYYR1
Genetics Home Reference (NIH)CYYR1
Genomic and cartography
GoldenPath hg38 (UCSC)CYYR1  -     chr21:26466209-26573404 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYYR1  -     21q21.3   [Description]    (hg19-Feb_2009)
EnsemblCYYR1 - 21q21.3 [CytoView hg19]  CYYR1 - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBICYYR1 [Mapview hg19]  CYYR1 [Mapview hg38]
OMIM616020   
Gene and transcription
Genbank (Entrez)AF401639 AK054581 AK223576 AK304124 AK313231
RefSeq transcript (Entrez)NM_001320768 NM_052954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYYR1
Cluster EST : UnigeneHs.37445 [ NCBI ]
CGAP (NCI)Hs.37445
Alternative Splicing GalleryENSG00000166265
Gene ExpressionCYYR1 [ NCBI-GEO ]   CYYR1 [ EBI - ARRAY_EXPRESS ]   CYYR1 [ SEEK ]   CYYR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYYR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116159
GTEX Portal (Tissue expression)CYYR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J86
Splice isoforms : SwissVarQ96J86
PhosPhoSitePlusQ96J86
Domains : Interpro (EBI)CYYR1   
Domain families : Pfam (Sanger)CYYR1 (PF10873)   
Domain families : Pfam (NCBI)pfam10873   
Conserved Domain (NCBI)CYYR1
DMDM Disease mutations116159
Blocks (Seattle)CYYR1
SuperfamilyQ96J86
Human Protein AtlasENSG00000166265
Peptide AtlasQ96J86
IPIIPI00895948   IPI01015410   IPI00792041   IPI00798224   
Protein Interaction databases
DIP (DOE-UCLA)Q96J86
IntAct (EBI)Q96J86
FunCoupENSG00000166265
BioGRIDCYYR1
STRING (EMBL)CYYR1
ZODIACCYYR1
Ontologies - Pathways
QuickGOQ96J86
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  
NDEx NetworkCYYR1
Atlas of Cancer Signalling NetworkCYYR1
Wikipedia pathwaysCYYR1
Orthology - Evolution
OrthoDB116159
GeneTree (enSembl)ENSG00000166265
Phylogenetic Trees/Animal Genes : TreeFamCYYR1
HOVERGENQ96J86
HOGENOMQ96J86
Homologs : HomoloGeneCYYR1
Homology/Alignments : Family Browser (UCSC)CYYR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYYR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYYR1
dbVarCYYR1
ClinVarCYYR1
1000_GenomesCYYR1 
Exome Variant ServerCYYR1
ExAC (Exome Aggregation Consortium)CYYR1 (select the gene name)
Genetic variants : HAPMAP116159
Genomic Variants (DGV)CYYR1 [DGVbeta]
DECIPHERCYYR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYYR1 
Mutations
ICGC Data PortalCYYR1 
TCGA Data PortalCYYR1 
Broad Tumor PortalCYYR1
OASIS PortalCYYR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYYR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCYYR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYYR1
DgiDB (Drug Gene Interaction Database)CYYR1
DoCM (Curated mutations)CYYR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYYR1 (select a term)
intoGenCYYR1
Cancer3DCYYR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616020   
Orphanet
MedgenCYYR1
Genetic Testing Registry CYYR1
NextProtQ96J86 [Medical]
TSGene116159
GENETestsCYYR1
Huge Navigator CYYR1 [HugePedia]
snp3D : Map Gene to Disease116159
BioCentury BCIQCYYR1
ClinGenCYYR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116159
Chemical/Pharm GKB GenePA27127
Clinical trialCYYR1
Miscellaneous
canSAR (ICR)CYYR1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYYR1
EVEXCYYR1
GoPubMedCYYR1
iHOPCYYR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:12:38 CEST 2017

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