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DANCR (differentiation antagonizing non-protein coding RNA)

Identity

Alias_namesKIAA0114
SNHG13
KIAA0114
small nucleolar RNA host gene 13 (non-protein coding)
Alias_symbol (synonym)ANCR
AGU2
lncRNA-ANCR
Other alias
HGNC (Hugo) DANCR
LocusID (NCBI) 57291
Atlas_Id 56485
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 52712394 and ends at 52714138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DANCR (4q12) / RNF31 (14q12)DANCR (4q12) / TBC1D10A (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DANCR   28964
Cards
Entrez_Gene (NCBI)DANCR  57291  differentiation antagonizing non-protein coding RNA
AliasesAGU2; ANCR; KIAA0114; SNHG13; 
lncRNA-ANCR
GeneCards (Weizmann)DANCR
Ensembl hg19 (Hinxton)ENSG00000226950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226950 [Gene_View]  chr4:52712394-52714138 [Contig_View]  DANCR [Vega]
ICGC DataPortalENSG00000226950
TCGA cBioPortalDANCR
AceView (NCBI)DANCR
Genatlas (Paris)DANCR
WikiGenes57291
SOURCE (Princeton)DANCR
Genetics Home Reference (NIH)DANCR
Genomic and cartography
GoldenPath hg38 (UCSC)DANCR  -     chr4:52712394-52714138 +  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DANCR  -     4q12   [Description]    (hg19-Feb_2009)
EnsemblDANCR - 4q12 [CytoView hg19]  DANCR - 4q12 [CytoView hg38]
Mapping of homologs : NCBIDANCR [Mapview hg19]  DANCR [Mapview hg38]
OMIM614625   
Gene and transcription
Genbank (Entrez)BC015222 BC045566 D28589 LC128577 LC128578
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DANCR
Cluster EST : UnigeneHs.744077 [ NCBI ]
CGAP (NCI)Hs.744077
Alternative Splicing GalleryENSG00000226950
Gene ExpressionDANCR [ NCBI-GEO ]   DANCR [ EBI - ARRAY_EXPRESS ]   DANCR [ SEEK ]   DANCR [ MEM ]
Gene Expression Viewer (FireBrowse)DANCR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57291
GTEX Portal (Tissue expression)DANCR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C864   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C864  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C864
Splice isoforms : SwissVarP0C864
PhosPhoSitePlusP0C864
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DANCR
DMDM Disease mutations57291
Blocks (Seattle)DANCR
SuperfamilyP0C864
Human Protein AtlasENSG00000226950
Peptide AtlasP0C864
IPIIPI00903340   
Protein Interaction databases
DIP (DOE-UCLA)P0C864
IntAct (EBI)P0C864
FunCoupENSG00000226950
BioGRIDDANCR
STRING (EMBL)DANCR
ZODIACDANCR
Ontologies - Pathways
QuickGOP0C864
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDANCR
Atlas of Cancer Signalling NetworkDANCR
Wikipedia pathwaysDANCR
Orthology - Evolution
OrthoDB57291
GeneTree (enSembl)ENSG00000226950
Phylogenetic Trees/Animal Genes : TreeFamDANCR
HOVERGENP0C864
HOGENOMP0C864
Homologs : HomoloGeneDANCR
Homology/Alignments : Family Browser (UCSC)DANCR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDANCR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DANCR
dbVarDANCR
ClinVarDANCR
1000_GenomesDANCR 
Exome Variant ServerDANCR
ExAC (Exome Aggregation Consortium)DANCR (select the gene name)
Genetic variants : HAPMAP57291
Genomic Variants (DGV)DANCR [DGVbeta]
DECIPHERDANCR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDANCR 
Mutations
ICGC Data PortalDANCR 
TCGA Data PortalDANCR 
Broad Tumor PortalDANCR
OASIS PortalDANCR [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDANCR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DANCR
DgiDB (Drug Gene Interaction Database)DANCR
DoCM (Curated mutations)DANCR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DANCR (select a term)
intoGenDANCR
Cancer3DDANCR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614625   
Orphanet
MedgenDANCR
Genetic Testing Registry DANCR
NextProtP0C864 [Medical]
TSGene57291
GENETestsDANCR
Target ValidationDANCR
Huge Navigator DANCR [HugePedia]
snp3D : Map Gene to Disease57291
BioCentury BCIQDANCR
ClinGenDANCR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57291
Chemical/Pharm GKB GenePA147357908
Clinical trialDANCR
Miscellaneous
canSAR (ICR)DANCR (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDANCR
EVEXDANCR
GoPubMedDANCR
iHOPDANCR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:30:34 CEST 2017

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