Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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DAP (death-associated protein)

Identity

Other names-
HGNC (Hugo) DAP
LocusID (NCBI) 1611
Location 5p15.2
Location_base_pair Starts at 10679342 and ends at 10761387 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DAP   2672
Cards
Entrez_Gene (NCBI)DAP  1611  death-associated protein
GeneCards (Weizmann)DAP
Ensembl hg19 (Hinxton)ENSG00000112977 [Gene_View]  chr5:10679342-10761387 [Contig_View]  DAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000112977 [Gene_View]  chr5:10679342-10761387 [Contig_View]  DAP [Vega]
ICGC DataPortalENSG00000112977
cBioPortalDAP
AceView (NCBI)DAP
Genatlas (Paris)DAP
WikiGenes1611
SOURCE (Princeton)DAP
Genomic and cartography
GoldenPath hg19 (UCSC)DAP  -     chr5:10679342-10761387 -  5p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DAP  -     5p15.2   [Description]    (hg38-Dec_2013)
EnsemblDAP - 5p15.2 [CytoView hg19]  DAP - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBIDAP [Mapview hg19]  DAP [Mapview hg38]
OMIM600954   
Gene and transcription
Genbank (Entrez)AK298670 AK311783 BC002726 BI823002 BP265421
RefSeq transcript (Entrez)NM_001291963 NM_004394
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_011546 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)DAP
Cluster EST : UnigeneHs.75189 [ NCBI ]
CGAP (NCI)Hs.75189
Alternative Splicing : Fast-db (Paris)GSHG0024655
Alternative Splicing GalleryENSG00000112977
Gene ExpressionDAP [ NCBI-GEO ]     DAP [ SEEK ]   DAP [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51397 (Uniprot)
NextProtP51397  [Medical]
With graphics : InterProP51397
Splice isoforms : SwissVarP51397 (Swissvar)
Domains : Interpro (EBI)DAP1/DAPL1   
Related proteins : CluSTrP51397
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations1611
Blocks (Seattle)P51397
Human Protein AtlasENSG00000112977
Peptide AtlasP51397
HPRD02977
IPIIPI00018117   IPI00030844   IPI00911094   
Protein Interaction databases
DIP (DOE-UCLA)P51397
IntAct (EBI)P51397
FunCoupENSG00000112977
BioGRIDDAP
IntegromeDBDAP
STRING (EMBL)DAP
Ontologies - Pathways
QuickGOP51397
Ontology : AmiGOautophagy  apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of autophagy  negative regulation of NF-kappaB transcription factor activity  cellular response to amino acid starvation  negative regulation of transcription, DNA-templated  death domain binding  apoptotic signaling pathway  
Ontology : EGO-EBIautophagy  apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of autophagy  negative regulation of NF-kappaB transcription factor activity  cellular response to amino acid starvation  negative regulation of transcription, DNA-templated  death domain binding  apoptotic signaling pathway  
Protein Interaction DatabaseDAP
DoCM (Curated mutations)DAP
Wikipedia pathwaysDAP
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAP
dbVarDAP
ClinVarDAP
1000_GenomesDAP 
Exome Variant ServerDAP
SNP (GeneSNP Utah)DAP
SNP : HGBaseDAP
Genetic variants : HAPMAPDAP
Genomic Variants (DGV)DAP [DGVbeta]
Mutations
ICGC Data PortalENSG00000112977 
Somatic Mutations in Cancer : COSMICDAP 
CONAN: Copy Number AnalysisDAP 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:10679342-10761387
Mutations and Diseases : HGMDDAP
OMIM600954   
MedgenDAP
NextProtP51397 [Medical]
GENETestsDAP
Disease Genetic AssociationDAP
Huge Navigator DAP [HugePedia]  DAP [HugeCancerGEM]
snp3D : Map Gene to Disease1611
DGIdb (Drug Gene Interaction db)DAP
General knowledge
Homologs : HomoloGeneDAP
Homology/Alignments : Family Browser (UCSC)DAP
Phylogenetic Trees/Animal Genes : TreeFamDAP
Chemical/Protein Interactions : CTD1611
Chemical/Pharm GKB GenePA27140
Clinical trialDAP
Cancer Resource (Charite)ENSG00000112977
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineDAP
GoPubMedDAP
iHOPDAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:10:16 CET 2015

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jlhuret@AtlasGeneticsOncology.org.